Array 1 2042738-2045368 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDKY01000002.1 Pluralibacter gergoviae strain FDAARGOS_386 pCNH_820.contig.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 2042738 29 100.0 32 ............................. TGCCATCGTTTTATGCCTCATTGTTGGTTGTC 2042799 29 100.0 32 ............................. TTACGCGTCATGCGCATCTGCTTGAGCGCGGA 2042860 29 100.0 32 ............................. ACGACGATGCTGATAGCGATGACGACGTTTAA 2042921 29 100.0 32 ............................. CCCTTGCGGAACCAATACGCTACCGGAGCGCC 2042982 29 100.0 32 ............................. CCACTTCTGGTATTTAGCCCTGCATTCGTCTG 2043043 29 100.0 32 ............................. CGCATTCACCGCCTGGAAGGCGATCTCGGTAT 2043104 29 100.0 32 ............................. ACGCTGGGCATACGCCTCTACTGGGGGATGGT 2043165 29 100.0 32 ............................. CGTCTGGACGCGCTGAAAGCCAGCAGGCAGCA 2043226 29 100.0 32 ............................. CTGATTGCCGCTGCGGGTCGTGGTGTTGAGTG 2043287 29 100.0 32 ............................. GCCCAGCGGCCCGCCAAACAGCCCCATCAGGC 2043348 29 100.0 32 ............................. ATCTGCAGGCGATGGTGATTACGTTCGTACAG 2043409 29 100.0 32 ............................. CCTGATCTTGCGTTTGCTGCGCTGGGTATGGC 2043470 29 100.0 32 ............................. CTGGACAGGTTAGGGCGCAGCGTACGCGACCT 2043531 29 100.0 32 ............................. ACCTGGAAAACGCCGTATTCCGGGTTATTCGT 2043592 29 96.6 32 ............................A GAATAGGCTGCGCCCAGTGGGCTTTTCCAGCC 2043653 29 100.0 32 ............................. ACCGGATGGCAACCATTCAGCAGGCTGAGTGC 2043714 29 100.0 32 ............................. GCCCTCTGATTGAGGCCAGCACGCTTTCGAAT 2043775 29 100.0 32 ............................. ATATCTACGTCCGCCTCTTCGAGCGAGCGCCG 2043836 29 100.0 32 ............................. GTTGCCTGCTATACAGCGGCGATATCGTCCGC 2043897 29 100.0 32 ............................. TTCGCGAACGTTGTAGCCCTCTTCGGCATAAA 2043958 29 100.0 32 ............................. TGATTCCGTTGCCGGGCGCATTGCCTCTTCGA 2044019 29 100.0 32 ............................. ATGGCACGATCGTACCCCATGAGCTGATTGTA 2044080 29 100.0 32 ............................. TTTGGGTTTTCTGCGTAACTCTGACCGGACCA 2044141 29 100.0 32 ............................. TTTCTTTTTCGGAATTATCTGTGCTAACTGGG 2044202 29 96.6 32 ...................A......... CGTATCGGGATTGGCGGCGCTGCCCTGTATGC 2044263 29 100.0 32 ............................. CTGTCGCGTCAGCAGGTCAATCTCTTTGAAGT 2044324 29 100.0 32 ............................. GTGGTGCGTGCGCTGCAGTCTGCGCTGATACT 2044385 29 100.0 32 ............................. GTAAGTCGAGCGGACGTATCGACGGCATGGTA 2044446 29 100.0 32 ............................. CGGGTTGGTCCTGGCGATATTATTTTCAAGAA 2044507 29 100.0 32 ............................. TTGGCGCGGGAGTTCGGGCTCGTGAAGGGAAA 2044568 29 100.0 32 ............................. CTTCTTCGTCGCAGCGTTATCGCCTTTAGTCT 2044629 29 100.0 32 ............................. GGTGACAACCCGCTGTATTATCACGTCTGCCT 2044690 29 100.0 32 ............................. TTTACGACGCTGACACCGTGGTATTTGAAGTG 2044751 29 100.0 32 ............................. AGATTATCACTTAACGCCTTCACTATATTGCG 2044812 29 100.0 32 ............................. TCATCCCCCTGGATCAGCAGGTCGATATACAG 2044873 29 100.0 32 ............................. CGTCAGTTACGCAGCGCCTCGACACGCTGACC 2044934 29 100.0 32 ............................. CGAAATTTGCTGCTATCTGTATCGAATGCATC 2044995 29 100.0 32 ............................. TAACCAGAATACGCCGGACTGATAAGGTGATG 2045056 29 96.6 32 ..........T.................. CAAAATGATTTATTCAGAAAACGAGAAATGGG 2045117 29 100.0 32 ............................. AGAGTGCCGTCCTACAGGCTACACCTCGTTAT 2045178 29 100.0 32 ............................. TTGGGATGCGAGAAAACGACGGTCTGCTTGAT 2045239 29 93.1 72 ...........AT................ GCTGGCTATCACGCCCACGGCCGCGCGTCCCGGTGTTCACCGCGCCAGGCAATCAGCATGGGAGCTTACCGT 2045340 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ======================================================================== ================== 43 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAATGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGGTATTTATGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : GATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTGTGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTTATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGTTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCGTTAACACCGGTGATTGAAATCGACCAGATTGAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2055645-2056711 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDKY01000002.1 Pluralibacter gergoviae strain FDAARGOS_386 pCNH_820.contig.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2055645 29 100.0 32 ............................. CTGGACCGGAGGCCATCATGCCGCTGAAACGC 2055706 29 96.6 32 ............G................ AACTCGTTGGGATGCAGACGGGTGAGCGCGCC 2055767 29 100.0 32 ............................. ACGCTACGGCGGCGGGGTCACGGAATGAGTTG 2055828 29 100.0 32 ............................. AGAGTGCATCAGCGGCAGAAAAAACCGAGCCT 2055889 29 100.0 32 ............................. CGATCCTATCCAGTACTCCTTTTGTAACGCTG 2055950 29 100.0 32 ............................. CGGCGCAACTGCTCGATGATTGCAGCGCAGGC 2056011 29 100.0 32 ............................. TGGGAAGGCGCAGACGGGAAAGAGCACGTCGC 2056072 29 100.0 33 ............................. CAGAAAGGCCGCGTCACTGGCAGTGAGTTCCGC 2056134 29 100.0 32 ............................. GGCATCACTAACGACCAGATGTCGTTCATCCT 2056195 29 100.0 32 ............................. CGCGTGGCGCTGGCGGACACCAACAGCCCTCC 2056256 29 100.0 32 ............................. GATGGGTATCGCGGGGGATGGGTCCGGGGAGA 2056317 29 100.0 32 ............................. AGCCGCTGCATACGGTGACAACAGGAAATCAT 2056378 29 100.0 32 ............................. CAGAGTAAGACAAATTTAACCGACAACTGTAT 2056439 29 100.0 32 ............................. GGTTTCTGTACGGTTTAACGTCGCCGGAGTGC 2056500 29 100.0 32 ............................. GAGCCACGCAGGAGCAGATCGCGCAGGCCGGG 2056561 29 100.0 32 ............................. TGGTGGACAACGTGGCCAATGGTCTTTTTGGC 2056622 29 100.0 32 ............................. ACGATACTCAACCCGCTTGAGCACCTCAATCC 2056683 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCTGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : GCGTACGGCCAGACGGTTCTGGCTCAGTTCCAGCGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAACGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTCCCCTTATTTCCCCTCCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAACTGGTGCCCTCGGGGAAGGTGCGGGACTTGGCCCGCTGCTGGTAGCCGTCTTTCTTACCCAGCGACCAGTTGGTGGCTTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCCGCCGGAACGCCCCAGCGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //