Array 1 24710-23552 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUQ01000105.1 Neisseria meningitidis NM271 gnm271.contig.104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24709 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 24643 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 24577 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 24511 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 24445 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 24379 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 24313 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 24247 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 24181 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 24115 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 24049 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 23983 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 23917 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 23851 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 23785 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 23719 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 23653 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 23587 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : ATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGCATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATACTAAGGGGCGTTTGGCTAAATTTCATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATGAAGATTTAGGTAAAATATTAATGAAGATGCTTCGAAATAACCCAATTTAATATTTTTGCTTCCTAAGCCCCTAATTTAATACGGCGACCATCTCGTGCCAA # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //