Array 1 2603027-2600498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077197.1 Vibrio cholerae strain PS4 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2603026 28 100.0 33 ............................ TGCAACATACCAGAGAGCGTCAAACCACCCTTA 2602965 28 100.0 33 ............................ TGACGCTGACCCATATAACGATGGAGTTCTCAT 2602904 28 100.0 33 ............................ TGGTGCGAAGCGAGATGGAGATAAGACCATGGC 2602843 28 100.0 33 ............................ TTGATGGCGTGCCTTGCTCGTCGGTAGTGGTGT 2602782 28 100.0 33 ............................ CGAGATCAAAACGAGGGCGGTTACTGATTGCTC 2602721 28 100.0 33 ............................ TCTCTAAGAGCAGTTCGACAGGCTCGCGCAGCT 2602660 28 100.0 33 ............................ CGTTTTGTCATAGCCGTTTATCACTTGAAGATT 2602599 28 100.0 33 ............................ TGCAGGCGAAGCCGAGCGCATGCGCACCATGCA 2602538 28 100.0 33 ............................ CTTGCGCATGTCTCTCGCCAGTTGCTCGATACG 2602477 28 100.0 33 ............................ CATGATCTGGTCGCACTTTCGCATCTTTAATCA 2602416 28 100.0 33 ............................ TCATGAGAACTGGCGTTACCACCCGCTCAAGAT 2602355 28 96.4 33 ...........A................ CTGAGAATTCAGCAGCAGGTTTTCCGGTTGATC 2602294 28 96.4 33 ...........A................ CTATGAATTTAGCAGTTGAAATGATGAGCAAAC 2602233 28 96.4 33 ...........A................ TTCACCGTGGCGCAGCCCTGTGTACACCGCTAC 2602172 28 96.4 33 ...........A................ CGATAAAACCTCTCCAGGTGTCACGGTGATGTC 2602111 28 92.9 33 ...........A.T.............. CAACAAAGGAAAGCCAAAATGCAACCAAATAGC 2602050 28 96.4 33 ...........A................ CGCTTAAGCTCGTCGCAAGCCCGAGTCATTTCC 2601989 28 96.4 33 ...........A................ CTTGATTAATAACCGGGTGTTTTCATCGTGTTC 2601928 28 96.4 33 ...........A................ TCGCGCCCATTCAGGAACCACACGCACCCCTAA 2601867 28 96.4 33 ...........A................ CTGCACACCATCAAAGCGAATGCCGATGAAACA 2601806 28 100.0 33 ............................ CGAGGCTTTACGTGCATTTTTGTTGCTTCCTGA 2601745 28 100.0 33 ............................ TTTGCATCATCTTGCGAAGGGCAAGAATGCTCC 2601684 28 100.0 33 ............................ TTGCTCTTTCATAAAGGCTTCTCGCTTGATGCT 2601623 28 100.0 33 ............................ CCCAAAACCAAATCATTCAGGCCGCAGGGTGGC 2601562 28 100.0 33 ............................ TGCGCGGCATCAGATGACACTTGATCGCACTTC 2601501 28 100.0 33 ............................ TGCGATGAGGCCGGAGATTTCGAGCTCTGCGGC 2601440 28 100.0 33 ............................ CGCGCACAAGAAAAGCAGCGTGCATTCAAAGAG 2601379 28 100.0 33 ............................ TTTAGCAAAACAACAGCAAAGGAATGGTTTTTT 2601318 28 100.0 33 ............................ CTAGTGTTTGTTATTGGTCGCACACTCTATCTC 2601257 28 100.0 33 ............................ TCTTGAATATCACGATACACATCGAAGAAGCGC 2601196 28 100.0 33 ............................ CTTGCCAAGTTCGCAGACTTCTTTATCTGTTGA 2601135 28 96.4 33 ...........A................ TCGTTGGTATGTGCTGCATCAGCGTTGAGCCCC 2601074 28 96.4 33 ...........A................ CTCCAGTTGCTTGGCTTCTTCGGCTCGCCGTAT 2601013 28 96.4 33 ...........A................ TCAAGACTAACCACACTACCTTCTTTCAGCTCA 2600952 28 96.4 33 ...........A................ CAAGCGCCGCTTGCTTGCTCTAAAGCTAGTCCA 2600891 28 96.4 33 ...........A................ TACTTTGCTGAACGCTACATCCGCACTTATGAG 2600830 28 100.0 33 ............................ CATGGGTTTGTTCATGCAAGCCTTCGGGGCTGA 2600769 28 100.0 33 ............................ CTGCACACCATCAAAGCGAATGCCGATGAAACA 2600708 28 100.0 33 ............................ TACCGCCGCAAGATCGAGTCGATATTCAGAGTC 2600647 28 100.0 33 ............................ CGAGGCTTTACGTGCATTTTTGTTGCTTCCTGA 2600586 28 100.0 33 ............................ TTTGGAGCAACTGCTATGGAAGTTCTTGAGTCC 2600525 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 42 28 98.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCAAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGCACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTCATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATCGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCCAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGTGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //