Array 1 17904-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFKI01000035.1 Neisseria meningitidis strain NM1673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17903 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17837 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17771 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 17705 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17639 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17573 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17507 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17441 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17375 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17309 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17243 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17177 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17111 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17045 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 16979 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 16913 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 16848 36 97.2 30 ..................C................. TCCTGCCAATTATCATACATAAGATTTTGC 16782 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //