Array 1 10643-10357 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLWA01000229.1 Bacillus mycoides strain M2E_15 contig_695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================= ================== 10642 22 100.0 45 ...................... ACTGAAAGATCAATTAAAAATGGCTTGTGGTAGGGGTTTTATTTA 10575 22 100.0 43 ...................... AGGTAACAGAAGGAGAGAAAGTTGAAGTTAAACTTGTTTTATT 10510 22 100.0 44 ...................... CTAAGTGATAAGAGCGCATTGTTTGGGAAGCGCCTTGTTTTATT 10444 22 95.5 44 .....................G TTGTTCCTGCAACTAATAAATGAGGGTGTTCTGTCAGTTTTATT 10378 22 100.0 0 ...................... | ========== ====== ====== ====== ====================== ============================================= ================== 5 22 99.1 44 TAAACGTAGTGGGATATAAACA # Left flank : CTTACTGTGAGTTTAAGGAAAACCTTAACTATGAGAAACACATCAAGATTACCGCATAAGGGAGTCAAAAAGAACGGAAAAAAATATGATTTATTACCATGGATTCAAATTTTAGATTTAGACTATGAATTCAATGAAAATTCAAAGACAGGTTCAGGTGTACTGTTAGATAAAAAAACAGAAAATTTCATTTAATAACCCACGCAACATAAAGAAAAAAGTATTTGGGATTGAAAAAAGCTATGAAGAGCTATTTCTTTAAATTGAATTTTATAATATTTTATAATTTACTAAGATTATTTTATAGTAGCAACTATTTTTGCAGTGTATCTCTTTACTGTAAGTAAATGTTAACCCCCTTGTCTTCCAAGGCTTTAACGGCATTTTTGAAAAAGTTATGAAACAAGACTAACGATTCACTGCAAAACCTATAAGTTAAACACATTAGATTCCTTGCTTTAATGAGGTTTTATTCTACTTTTTATAGGGGGTTTTATTTA # Right flank : CTGCTGTTTGTCTCATTTCATACAGCTTTTCAACNNNNNNNNNNTCAGGGAGACGAAAGGTTACTTTCGTCGTGGAACTGAGAAGCTCCCACTTCAAGCTTTGCTAAGTGGCGAGTAGTTCACGTAATAACAAACAAAATAAAATTCATAAAACTAATGAAATTATAGAACCGTACCTTTATAAACATTATGTATCCTGGATGGAAATTAATGATCAGAAAAAAAATGCGGCTATTATACTATATGATTTAGAAACCAATACACAAACACAAATTGCCACCGTAAATTCCTATGACACAGCTAGTACTATTCTTCATATGAATGAAGATAAATTAATCTATACGAACTCTAACGAAAAACAAACTACCATAAGCATATATAATCTTAAGAGTAAACATACAAGCACTTATTTAGTTCCACAAAATAATGTTTTAGCACCTAGAATTGTGGGTGATAAAATCGTCTATGTGAGCCTGTCTATCGATGAAAAAAACACTAAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:-0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAACGTAGTGGGATATAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 19206-18524 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLWA01000229.1 Bacillus mycoides strain M2E_15 contig_695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 19205 29 100.0 35 ............................. TATGTTTTAACTCCTTATAATATTGGCAGCTATAA 19141 29 100.0 37 ............................. ACAGCAGGATTACAATGCGGTCGTATTGACGCAACAA 19075 29 100.0 36 ............................. GTACCTAAAACAGATTGTGGAAGGCTACCTTTGATG 19010 29 100.0 36 ............................. TTTGAATGTGCAGCACGCTATCCTACATAGAATTTT 18945 29 100.0 36 ............................. TTAAACGCAAAGCATGCAGCTCTTAAAGCGAAAGAT 18880 29 96.6 36 ..........................G.. TATCAACGAGTAGATTTAGCTTTCCTAAAACGGCTT 18815 29 100.0 37 ............................. GTATGAATAGTTGTATAAGGAATATCGGATTCGTGCG 18749 29 100.0 37 ............................. TTGCAACAACAACTTTTGGATCAGCGATAATATGCGC 18683 29 96.6 37 ........A.................... TTTTGGATTTTAGGATATCTTGTATTAAAAGCCCCTT 18617 29 100.0 36 ............................. GTATCCTGTTGTGGGCTTTCTATAGTACTTGTAGTT 18552 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.1 36 GTTTTATCTAAACGTAGTGGGATATAAAC # Left flank : AACAACTAAAGCTAACAGTTTACGTTTCATACTCACCTACCCCTTTGTTTGTTTATCTGTTACTTAATCTTTTTCATTTCTTTATGACCTTTATCTATTAGCTTAGAAGCGGTTATTAATTCATCACTCGCTATTTCTACACTTACTTTATCTCCCATAGATAACCCAGTTTGCATATGCTCTACTCCTGCCTTAACATATGTCATTGCTTCATCTACTTCCTTCTGTACAAGATAATACTTTTGGTCATACGTTTCTTTTTTGTACATTTGTTTATTTCTTTAGGTTTTTAGATGTGTTACGTTTATATTGTAGTAATAACTAACTTTGCAGCGCATCTTAATAATTACGTAACATGCTAAATCTCTTGTGATTCATGGGATTAACATAATTTATGAAAATATTTATGAAACAAGACTGGCGGTCCACTGCAAAATTTGCAAACTAGTATCAATTAGATTCCTTGCTGTACAAAGATTCTATCACACTTTTTATGAGGG # Right flank : TATTTTATTATCGTAGCATTAAAAGTTTATCTGAACGTAGTGGTCAAATGTATATTATGAGTGATCCCCCTGAGATGGTTATTGTAATCTAGGGGGACTTTTTCTTTTTTAGAATCAATACAAATATTAACATGGAATATTTTTCATTTTATACTATAATTAAATATGGTTAGGAGGTTACAATAATGTCAAAGGTCTCAAACTCCCTTCGTATTCTTTTATTGCTTTCAAAAAATAGAAAGATGTCCGGGGAGCAATTAGCAAGAATGCTAGAACTGAGTGGAAGAAGTGTTCGCAAGCATATAAATGATTTGTTAATGGCGGGTTTTATGATACATACGATCAGAGGACGAAACGGTGGTTATTTCTTAGAAACAAACCCTCTTTGGAACAGCTTTTTAGAGCAAAAAGAATTAGATAAGTTGACTGAACTAGTCCGTAAGCAACTAACACTTAATCCGTATGATAAAGTCGTCCAACAATTAGAAGAAAAACTAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAACGTAGTGGGATATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //