Array 1 50711-52392 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOGT01000003.1 Rothia koreensis strain JCM 15915 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 50711 29 100.0 34 ............................. GCGGATAGTGTCGGTTTTGGTGCAGCGGGGCGGT 50774 29 100.0 33 ............................. ACCGGAGGTACCAGCTCCGGAAAACATGAAACA 50836 29 100.0 32 ............................. AGTGGCACGATGGCCGGCCACGGTGTATTGAC 50897 29 100.0 32 ............................. GTAGCGCTCTACATTCGGGACGAACAAAGTGA 50958 29 100.0 32 ............................. TCGGGGTATTCGCCGGTGATCTCGGCGTACGC 51019 29 100.0 32 ............................. TGCTGCGCGTGAACGCGCCCGAGCAGCGGCGG 51080 29 96.6 32 G............................ CTCGCAGAGCGATTCAGCGAATGGGTGTGGGA 51141 29 100.0 33 ............................. AGGTCGGTCTGTCCGGCGATATTGCTGTGTTTG 51203 29 96.6 32 ........................C.... TTCAACGCCCCGTCGGTGGCGTCCTAGGCCCG 51264 29 100.0 32 ............................. CGGGGCGGGACTTGGACTCTGTTTATGACATT 51325 29 100.0 32 ............................. CCAGGTTGGTTCCGTTGCAGCCGGGTGATGTC 51386 29 100.0 32 ............................. CAGGGCGAGGAATACAAGGGCGCCGCCCTGCA 51447 29 100.0 32 ............................. GAATAATCCGGGCGCGGCTCCCCCAACACGAT 51508 29 100.0 32 ............................. CCAGGGGGTGCGTAGTGCGAGCTGGTGAACTA 51569 29 100.0 33 ............................. CACGCCCGGATCACCTCGAAATCATCCGGCGCA 51631 29 100.0 32 ............................. TTTGGGCAGTTCCAGTTCTGCGCTATCCGGGC 51692 29 100.0 32 ............................. CCGGTCTCCGTAGCCGCCAAAGCCTCAGACGA 51753 29 100.0 32 ............................. ACTAAGAAGAAGCACGCCCGCAAGGTCGCGAA 51814 29 100.0 33 ............................. CAGGCCGCGGCCATGCGGGCGGCGTGCAACGAG 51876 29 100.0 32 ............................. CGGGCCTCGTCCAGCCCTTCGTGGTTTTCGGG 51937 29 100.0 32 ............................. CGCCGGTCCAGCCCGTCGAATGACCGACCAAA 51998 29 100.0 32 ............................. CGGGCCTCGTCCAGCCCTTCGTGGTTTTCGGG 52059 29 100.0 32 ............................. TGAGACCCCGGTCCCCATAGGGAGGTTAAAAG 52120 29 100.0 32 ............................. ATCCACTCCCGGTACAACTGGCCCACACCATC 52181 29 100.0 32 ............................. CAGAGAGGAACTGTCATGGCAATGCTCGATGA 52242 29 100.0 32 ............................. TCATCGAAGTGCGCGGCGACGTGAGGGTAAGC 52303 29 100.0 32 ............................. CAGCTGAACACCGGGACCAGGATGGCGTTGAT 52364 29 93.1 0 ...........A..C.............. | ========== ====== ====== ====== ============================= ================================== ================== 28 29 99.5 32 ATCTTCCCCGCGCCTGCGGGGGTGTTCCC # Left flank : GTCCTGCTGGACTGCGTGGATTTATCACCCGTTGGTTGCTTGAAATTTCAGCCGGGGTATTTGTGGGCTGTGTTAGTGCGCGGGTTCGTGACGAGATCTGGAAGGCAACGGTGGACCTGGCCAAGAACGGACGTTCCATCATGGTCATTGACGCCGATAACGAGCAAGGGCTGGATTTTCGAGTACATCGACACGATTGGATTCCCAAAGATTTTGATGGCCTGACCCTGATGCAACGTCCGTTACCAGGGCCGGTCAGCGGGACCATCTCTCGAACTAAAAACTTCGATTCCGAGGCGTCGGGCGGCCCCAACGACTCTCCTCAATTTAAGGGCCAGGAATCGGGGGAGTCAGGACGTACGCCAGATAGGGGATGGAGCAAGGCATCGCGCAGGCGGTTCCTTAAACGCACCAAAGATTAGCCTTGTCCTGCGATCCTGACCTCGTCGAAAGTGAATGAATTTTGTTGCTTGGGACTACAGTTGTCTACGGAAAGCAGT # Right flank : CGAAGGGGACAGGCAGAACTCCCCAGCAACCGAAACCATCACCGCGCCCGGGGACGGGACCACTGGCACCCAGGCGTCGCCGAATATCTTCCCGGCACCGTGGGGCCCAGGACGAGGGGGCACCCGCCCTCTGCCATTCTCCACGTCGGGGCCGGCTGGTCGCCTACGGCTTTATCTTCTAGGATCCAGGCGCTACGAGAGAGCAACGAAGCTGAAGTAATTGGGATAGTTGTCGGGTAAAAGGCTATACCTCCTGCACGTGGGGTCAGCGGCGCGGCTGCTGGCCCTCGAGCTCTCCCCGGGAGAATGCATCCAGCTTTCCCCTCACGAGGCGCACGGCGAGCCACACCGCCTCGGCGACCATGATCACCAGCAAGAACCAGCGTGCGACGACGAGCCCGGCGGCAAGTCCCGGCCATGCACCGGCGGGGTCGGACAGAGCGGCGTCGACCGCAAGGTTTCCGGCGATCGTCAGGACGACGAACACGAGCGGCGGGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCCCCGCGCCTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //