Array 1 312242-311236 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134381.1 Corynebacterium kutscheri strain NCTC11138 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 312241 29 100.0 33 ............................. CTTGAGTTAAATTATGCTCATGAAGAACGCAAG 312179 29 96.6 32 ............................G GCGTCGGCGACATCTTGATCTGTGATGCGCCT 312118 29 100.0 32 ............................. CCTCCGACAGGATACCCACAGTCTCCCAGTCG 312057 29 93.1 32 ...............A............T CATTAACACCAGCGTCGTAAACCCGTTGTTTG 311996 29 100.0 32 ............................. CAAGACTGTTTTTTACCCCACACCCTAAAACT 311935 29 96.6 32 ............................G GTATCGCTGATGCTTTTGAGGCTGTTGGTGTA 311874 29 96.6 32 ............................T ATTGCCGTTTTCTTTAGCGGCGGCCACTAGGT 311813 29 100.0 32 ............................. GTGCCAAGCGATCCATGCTGGTAACGACAAGC 311752 29 100.0 32 ............................. GTGCCAAGCGATCCATGCTGGTAACGACAAGC 311691 29 96.6 32 ............................G GCCTGACTACGAACCGAAAATTAAATATTTCT 311630 29 96.6 32 ............................T GGGTTGGTAATCCCTTTACGATTGCGCAAGGT 311569 29 96.6 32 ............................T GGGTTGGTAATCCCTTTACGATTGCGCAAGGT 311508 29 96.6 32 ............................T TATTGTTCTTCTTATAGTGGGTCAAAACACCA 311447 29 96.6 32 ...T......................... TTGGTGGCTGGTTTGTTTCAGCAACCTATTCA 311386 29 89.7 32 ..........................TGA TTCGTGGTTTGACATGGTAGATCAGCCGCCGT 311325 29 96.6 32 ............................G ACCAAGATGACCAACTCCCCGTCGTCAATCTC 311264 29 93.1 0 .........T.......A........... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 96.8 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : CAGGCAATTCTGGCACATCTAATACAGTAACAGCATCCTCTACTGGCGCCTCGATAATTTCAGCCTCAGCTACATCACCCGCACCTTCAAGCAATACGGATACCGAGTTATCTTGAACATAATTTTCTTCTGATTCCTCCAAAATAGAATCAGCTACTTCTTGCGCCGAAACTACTGGAATAACGCTCAAGATAAGAACAATACTTAACACAGCAGCATTTAATGCATGAATAAAACAACGAAGCGGAAAAAATATGTTCACAACTATTAATAATATTCACTTTTATCGCAATAGTCACTAAATAATACATAAAAGTAAACGAGGAATCTTTTGCGTAGTTTTTAATCGCAAATTCCGCTTCATCTAAATGCCAAATAGAGAACATCCATGACTAAGAATCTGTTCATACATTTGTAATGGAACTTAACTCACAACCTAGATACAAAAGAAAGTGATTGTATAATCCGTAACGAGAGCCAATTCTTACTGGTTATCAAGT # Right flank : AGTGCAAAATATCTGCAAGGATGAGACGGTTATGCTCCAGGAACTTGGCCCACGATCGATTCTTACTCCTATGATTAAGGAAACCTGTTTCCAGAATCCTAAGAAAGGGGAAGACCTTTGAGTGCGCAACGAACAAAGAATCGTAGTACCGCTGCGCTGCGACGGAACATGAGCGTAAAGGAATTCGATGCTGGTTACTTTTACGCTGCAGAGCTGAAACGGTTTGCCCGGGAGATTGGCATTTCTGTAGGAAACCGTAGAAAGTTCGAGGTTGAAGATCTGATTAGATCGTTTCTTGAAACAGGTGTTGTTCCAACTAGTCAGCCGACCTTGCCAAGAAACAAAGGCGAAGAAAGAGACAGACTAGTTCTGGATGAACAGGTCCGAAACTATGTGGATGACAAGGAAACCAAGGAGTTTCTTCTCGATGCGGTGCGCAGTTCCTCACCAGGCATCAAAAAGAAGTCTGGTCAGTGGTACTGGCTCAACGACTGGAGGAG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 316540-316328 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134381.1 Corynebacterium kutscheri strain NCTC11138 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 316539 29 96.6 32 ............................C CGAACCCCCTAGGTGTTTTCCTAGGGGGTGTT 316478 29 96.6 32 ............................A GCATCATCGAAAAACCATCACAAGAGAAAAAA 316417 29 100.0 32 ............................. AGCGCGCCCTTCAAGCCTGTCGATACTGACCG 316356 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCG # Left flank : ATCTTCTGATAGTTTCTCTATAAAAAACAAAGTCATTGAGCTATGGGATGAAAAACTAGAACGCGTCAGCGGAGGATATAACTGGGATGACTCTTCAGGAGATGATTACCCTTGATTACAATTGTTCTCACAGCATGTCCAGCTGGGCTCAGAGGTCAGCTTAACCGCTGGTTATTCGAAATTTCCGCAGGCGTTTTTGTTGGGCATGTCTCAACTAGAATTCGTGATCGCTTGTGGTCGATTATTGTTTCCGAACTTAAAAATGGTCGTGCAATCATGGCATTCTCTACCTCCAAAAATGAGACAGGGTTTGAAATTAAAGTACACCGCCATGATTGGGAAATCATTGACTCTGATGGCATACCCCTCGTATTAAGACCAACACGTTCTAACCCAGAAAGTCCTTTACGGAAGGGGTGGTCAAAAGCATCACAGCGTAGACGTAAAAGAAAGTGAAGATATAACCCATAATCGGAACAGATCTTTGCTGGTTATTAAGT # Right flank : TTTTCTAGCTATTGCGTCACGATCATCAGCCACAGAGCCGCCACCAGCACTATCAACTTTTGGCGCGCCCTTAGAGGTCTTCTTTTCCGCCCATGCAACTAGTGCCTGCGCGGCGGCTTCTAGCTCCTCACTGTCAGCTGTTACTGGAAGCAGCTCTACAGGAACCCCGTGCTTGGCAGCCATACCAGAGCGCGCGGCTTCGATGGTTTTGCGCTGTTCGCTAGCCTCAAGCTCAGCGATACGCTCCAGCGCTTTATCAAGCTCGGTCTTGCTTTCCTCTTGCTGCTTTTTAAACTGCGCTGCAAGAGGCTCAATCTCTTTGAGCTTTGTGCGATAACCAGCGGCTTCGCGGCGTAGCTTTTCGACATACTCACGGTCAAACATCTCAGGCTGTGTATCCTGATTCTTTGCCTCGGTAGTTTTTGCTGCTACGTCGTTTGGGGTTGGTGTTTCATGTTGGCTAGTGGTTGTTTCTGTCTGATCCATTAGCTGTATCCTCC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1288273-1288850 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134381.1 Corynebacterium kutscheri strain NCTC11138 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1288273 29 100.0 32 ............................. GTGAGATGCTTAGCGCCCTAGAGACAGTGATT 1288334 29 96.6 32 ............................C GGAGTCAACATTGGCGCGAATCGGCTTTTTGC 1288395 29 96.6 32 ............................T TCGCTTACTCCCACCATGGCACTGATCCTGCT 1288456 29 96.6 32 ............................T TCTAGATTCAATAGTGTCCTTCCTGATGTGTG 1288517 29 100.0 32 ............................. CCCGTCTTCTGTGTGTCGCTCGACCCGGTGAG 1288578 29 100.0 32 ............................. GATTAGCCAATGACTATTGCAAGCCGTGAGCT 1288639 29 100.0 32 ............................. TATGTACCCGCTGAAACATCAATTTCTTCCCA 1288700 29 96.6 32 ............................T CCGCCATGACGTTTGACGCAACTACAGGTGTC 1288761 29 96.6 32 ............................C GTGAAAAGCTTTTGTGTTTGGTGGGTGCTTTT 1288822 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTTGTCCCCGCTCGCGCGGGGATGTTCCG # Left flank : GATTTCTAAGCGCGTTAAATCAATCCACGGTAGAACGTCGCAACGCCATCGCTAGGAAGAGCTTTATACTTAAAACCCACTCGACGACTATCCCGAAATCATCACGGCTTTAAAAAGTTCTCTTCTTCTAAGCCTTAAAATAAACACTATTAATAGCTCATCAAATAACAAGATCATTAGGCTTTCACGATGAAAAATAGGCCGCTAGAAAATCAATCCAACTGGAACAAATACTTTTTAGAAAAATGATTTTTCACGATTACTCGTTACACTCACGACATACCCAACTAGCTTAAAACTCAGCTAAAATAAAGCTGAAGTTGAGGTTCAAATACACCATCATCATTGGATGACCATCAATTCCAATGCTAGGTGCTTACGCTAAGCCGCACACAATCTTCCCCAAAATGCTCTAGAGAAAAGGTAATAAAACACCACACTGTGAACGAAAAGTGAAGATATAATCGGTACATGGAACAGATATCTGCTGGTCATTAAGT # Right flank : GCAAGCACAAAGAAAAATGCCTCAGCAAGTGGTAAAAACATGGTCGCTTGCCAGCTAAATCCAGCTAGACGCAATCATATTGGCACAAGCAACATCTGCCCTACCAACAATAAGGGCGTTGTCATAAGTAATGTATCCGCTGCTCCACCGGCTAATCGGGTAAAGCTAATCACATAATCCACGCACTAAGCAGCACCACCCCTGCGGCTAGTAAGACCGGTGCAGGGGCGTCGAAAAGCGCACGAAAGCTCCACAACAACGCAGCCACAATAAGTGGTACCACAAGAAAATTACCCACCATAACCCGATAATGAAATGATTGTTTTTCTAATCGAATTGGTAACTCAGCAAAAGTTACCAGCATCAATGCCATCAATAGTGGAGTAATAAACACCTGCCACGGTGCATTGATTTTACTAGCACATGCACCGGCTACTAAAGCAAGTAAATAATAAATTGCAGAACGCATTAATGGTAGCAGGCTAGCAATCCGCCAGGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCTCGCGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //