Array 1 1181399-1180504 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UHFV01000002.1 Streptococcus macacae NCTC 11558, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1181398	    36	 100.0	    30	....................................	AGAGATTTAACTAATCTAGCTAATCGTGTA	
   1181332	    36	 100.0	    30	....................................	GGCTTCTGCTTTTGTAGTTGCTAAACAAAT	
   1181266	    36	 100.0	    30	....................................	TGCACTTTAATCTCGTTAAAAGACTCGGTG	
   1181200	    36	 100.0	    30	....................................	AAGTCAATTTAAATGCGTGCTGAGCTCGGA	
   1181134	    36	 100.0	    30	....................................	AATGCTATCTAACATTTGAGATACCTCTTT	
   1181068	    36	 100.0	    30	....................................	TGATGATGGTCAATAATGAAGCGGAAATCT	
   1181002	    36	 100.0	    30	....................................	TAGCTACGTTTACTTTCTTCTATCTTCTGA	
   1180936	    36	 100.0	    30	....................................	TATGGAACAGGAGCTTACTACAACCTACCC	
   1180870	    36	 100.0	    30	....................................	TACGGTTGCTGAAGATATAATAGACGCTAT	
   1180804	    36	 100.0	    30	....................................	ATCTTTTTGGGCGAAATCACCGATTACCTC	
   1180738	    36	 100.0	    30	....................................	ACTTGGGCCGAAATTGGCGAGGTTGTTGGA	
   1180672	    36	 100.0	    30	....................................	AGTGTTGGCAGATAGTACAGTTGCTTGCAT	
   1180606	    36	 100.0	    30	....................................	AAAACAAGTTTGGTAGCCGTGGTGCTGGTA	
   1180540	    36	  83.3	     0	.............................A.TTGCT	|                             	C [1180508]
==========	======	======	======	====================================	==============================	==================
        14	    36	  98.8	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   TGATGAAACAGGTGGTTTTTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAGGGAGAAGATTTAGAAGAAGCCATGAAGAATGCCCGCCAAATGTTGGAGAGCATACTGGCATCTTACTTAGATGAGGGAATGGACTTACCCCAGCCGAGTGATATTAGAAAGATATCAGCTAAAGATGGCTTTGTTACTATGATTCAGGCCGATCCCAGTCCTTATCTTAGAAACAATAAAGCTATTCGGAAAAATGTGACGGTCCCTGAATGGCTGGTGCGATTGGCTGATCGTGACCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAAGAAATTACAATTATAAAGTAAAAAGTGCCAGAAATGTTGATTTCTAGCGCTTTTTTAGGTATAATATAAATGATTAAAATATTTAAAAAGGAATCATTTCGAAGCTGAAATCTGGCTGAGATGAGTGGCGCGATTACGAAATCTTGAGACAAAAATTGGTCCACGAG
# Right flank :  TTCAGAGATTATAGAAATTAAAAACTCAGTACGTATTAGTACTGAGTTTTTAAGTGATAACAGTTCCGATAATGTCAATAGTATCATTTTCCTTTAAGATAATGTCGTTATAATCGGGATTGAGCGAAATAAGTCTTATTTCTTTATTTTTGCGATAAAATTTTTTGACATATGCTTCATTATTTACAATAGCGACGATAATTTGCCCGTGATGAATCGTTTTAGTTTTTTTAACGAAGATGAGATCACCATCGTAAAATAAGGGTTCCATACTATTGCCATTGACCCTAAGAGCAATGTCGTGTTCTGGTATTGGTGCTGGATACTGAATCGTTTCTGCTTTTTCATGCCCTACCCAAACACCTGTTCCAGCAGATACTTCACCGTAAAGTATCACATCTTCATACTTGTGGCCTAAAGCCTGATACAAGTCTTTGACTTTTTTGATATTATTGAGATCAATCCTATTTTGATCTTCTAATTCTTTAGCAATAAATGTC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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