Array 1 308395-309031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZI01000011.1 Aggregatibacter actinomycetemcomitans RhAA1 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 308395 33 100.0 33 ................................. GGAAAAAACTTTTTAAATGGCTCTAAAATTTGA 308461 33 97.0 35 ................................C CGCCCGCAGTTTATCGAGGACGGGATTTTTATTTT 308529 33 97.0 34 ................................T TATAAATATAGGCTTGGGTTGCAAGTAAACACAA 308596 33 97.0 33 ................................C TCTTAGTTAATTAAGCAACGAATCTTAAGTTGC 308662 33 100.0 33 ................................. TCCCCGTAGAAAAGATGCACATGATTTAATGCG 308728 33 100.0 34 ................................. ATTTAAAATCCATTTTTTATTTCCTTTGGTTGTA 308795 33 97.0 39 ................................T TTTTGTGGACGGCGTTAAAAACCCAACCTCAAACGGAAA 308867 33 100.0 33 ................................. TCACCAGAAATTGTAAACTGAATGTTGAGAATC 308933 33 100.0 33 ................................. GATGGTGTACTAAACCTGATGTAATGCTAGTAT 308999 33 81.8 0 ..A....C............A....C.....TT | ========== ====== ====== ====== ================================= ======================================= ================== 10 33 97.0 34 GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Left flank : ATGATTTTGAACAGACTGTATTGCCCATTGGTGCAGGGCTACTGTTAGTCGTAAAAAATAACCGTTAACTGTAGATTGGGTTGCGACGTTCTGTTTAATTCAACTTACAAATGCTTTTAGTCACTCCGAAAACCGATTGGTTAAAAACAAAAAGTGCGGTCAAAATCCAAGTCGTTTTTAAAATATACGGAAACTGCAATATATTCCCTGCATTATTCCATCAGGCACATTTTTATTTGGGGAATTTTGTTGGTGCTATCTTTTTTAATAGTATTAACGGCGTACCTTCAGCGATGTGCTTGTTATTCAGTTCGCTAGCCCATGCTTCTCATCAAATTCCTGCAAGCTAGCGATCCTTATTTTCTTTAACAATTTGCAATAGTTAATTCATTTGTATAACGATGACATGCTCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAAGACAGTAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGTA # Right flank : TACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGCTGCCTAATGGTAGGGCGGCGTTTAACAAAATGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATACAATCCTTTCTTAATTTTATTCAACATACCGGTAATCCCAAAAAAACACCTCCAAAATCGACCGCACTTTTTCCCCATAAAATAAAAAAGCTGAATCTCTCTAGATCCAGCTTTTCTTTTATCTATTTATTTTATTACGCTAATTCAGCACGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAAGGTTTCTTTCCAGCCGCGGGTTTTTAAACCGCAGTCCGGGTTGACCCATAGGCGTTCTTTCGGTACCACTTGGAGCGCTTTGCGGAGCAAGTGTTCGATTTCGGCAGCGGTTGGGACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCTATGTCGTTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93502-94876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZI01000010.1 Aggregatibacter actinomycetemcomitans RhAA1 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 93502 33 97.0 34 ................................T TTTACCGCTTCAACAAGTAGTGCTGTTACTGCTG 93569 33 97.0 33 ................................T TGGTCATAAACCTTTGCTTTGCTCATTTTTAAA 93635 33 97.0 33 ................................T AAGATTTCGCGAATATCGCGGATGACGTGATGA 93701 33 100.0 34 ................................. AAATTTAATAATTCAAGAGAAGTCTGTTCAGTGT 93768 33 97.0 36 ................................T AAGCAGTGTGTGCGTTTTGAAGCACGTTTAAAACAG 93837 33 100.0 34 ................................. TATTATCTATGTTGTAACTATAAAAGGTATCACT 93904 33 97.0 33 ................................C GGTAATAGGGTAGATTATGGCAATTTTAGCATA 93970 33 97.0 34 ................................C ATGCAACCAAAGCACCGATGATGATACCAATAAC 94037 33 97.0 35 ................................C CCCATGAAAAAAATAAAATTTGCCACATAATCACC 94105 33 97.0 34 ................................C TGGAGCGCATCCAATGATAAAGATTACCTAATAT 94172 33 100.0 34 ................................. CCATTATTTATTTTTGTCATGTATTGTCTTTGAA 94239 33 100.0 35 ................................. ACACTATCCAACGTGCAATAAATCTGATAATCGTC 94307 33 100.0 35 ................................. GGACTTACTCCCTTTGACACGCAATAATCAAATAA 94375 33 100.0 34 ................................. TATTTACCGTTTACGACAGCGTGTTTAGGGAGTT 94442 33 97.0 35 ................................G CTTGCGGCACTCAAGGCTAACACTTCGGCTTTTGC 94510 33 97.0 34 ................................T TATTATATTCTTTTATTAAAGCATCTACGTTTTT 94577 33 97.0 35 ................................C CGTTTATGCCATCATAGCTTTTGTATAGCTGAAAA 94645 33 100.0 33 ................................. ATTTCGTTACTCATTATTTCAATTCTTCAATAG 94711 33 100.0 34 ................................. TCCACAATCATTTAAGGTGAATGCTTATTTTGAT 94778 33 97.0 33 ................................T GGTGATGAATTACGCACTAAAATTGGTTTGGAA 94844 33 93.9 0 .......................C........G | ========== ====== ====== ====== ================================= ==================================== ================== 21 33 98.0 34 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGCGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCATCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGGT # Right flank : GGGGACTCTGCTACATCTGAACTCTGATACCAACTAAACTAAGCGCCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAACACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCGTTATTAGTCGGGGTGCTTTATGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTCATTGAAAAGGAAAAATTATGCAATATGGTTTTTGTCGCCCTGTGCCGGTAAATGGCGGAGGGCATTATGAGTAAGGTTGCGAGCGTTGACTATCTCCGGTTAGGGCAGCGGCGGCGGTGCTGGGATTGAGGCGGATTTGACGATGTTCCAAATGCATGTCGTTTGGTTCATCGGTGACCGTGCAAAATACCTTGAACGTGGTTGATATTTATGCCGTGTCACGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //