Array 1 498630-500645 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIH01000002.1 Listeria monocytogenes strain FSL L7-0639 NODE_2_length_506021_cov_19.115305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 498630 36 100.0 30 .................................... ATGTAGAAGCTTTAAAATTATCCAGTGACG 498696 36 100.0 30 .................................... TCCACAAAGTTCAATTCAAAACATAAGTGG 498762 36 100.0 30 .................................... AGTATCGTAATTTATAGCATCAAGTAAAGA 498828 36 100.0 30 .................................... CGTTGAGTTTGCAGGACAAACAAGTGAGAA 498894 36 100.0 30 .................................... TTTAACTTTCATTCGCTGCACGTATAAGGG 498960 36 100.0 30 .................................... GATCATAATAATCTAAAATTACGTGCGTAT 499026 36 100.0 30 .................................... GATTATGAAGTGATCGAGTCTTTAGCAAAA 499092 36 100.0 30 .................................... AGACTATAACGATAATTTAGTAAAACTAGC 499158 36 100.0 30 .................................... TGAAACACAATAGTAGATATGTTACATTCA 499224 36 100.0 30 .................................... ATCGCCATTGACTTTCATTATCTCTACTGC 499290 36 100.0 30 .................................... ATCAATAGATTATATCTTTACTCTCGACTC 499356 36 100.0 30 .................................... TAGAACCATATCATAAATGCCAATCTAAGG 499422 36 100.0 30 .................................... AAATGGATTTTGTAATCTGCCAGTTTAACA 499488 36 100.0 30 .................................... TATTTCCGTGATTGTGTCACGATCTCGAAT 499554 36 100.0 30 .................................... TATACAATCCATTCGCCGGTGGTTCTGTTC 499620 36 100.0 30 .................................... CAGTTGATGAAGTTTTATAAATGCAAAGAG 499686 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 499752 36 100.0 30 .................................... TATTAAATCTGCCAAACCCCATTTACTGCC 499818 36 100.0 30 .................................... CAGTATCTACATGACTTTTACGCAGCCGCA 499884 36 100.0 30 .................................... TTTAAAATGCCATGGATTCATTTGTTGATT 499950 36 100.0 30 .................................... AACGACTAAATGTTGAGCGAATTATCTTAG 500016 36 100.0 30 .................................... AAGCCGGCAGAAACAGTAGCACAGATATTT 500082 36 100.0 30 .................................... TATCTATCATTTGCATATAATAGGCGAATT 500148 36 100.0 30 .................................... AGAACTCGCAGGAAGTTGAAGCGCTGGAAA 500214 36 100.0 30 .................................... ACTAAACCCTGAACCGCCCCTCATTGAAGA 500280 36 100.0 30 .................................... TAATTGCCGCAAAAGTAACCGAAGCCGAAT 500346 36 100.0 30 .................................... AATTAACTTCACACCTGCATCAATAATCTT 500412 36 100.0 30 .................................... TCCTCCAGCCCAACTCGTCTATTAGAGCTA 500478 36 100.0 30 .................................... CTTGATTTTTTGCAATAGACAAAACGAATG 500544 36 94.4 30 .........T................T......... GGGCTGGTTATTTTAGGCGGGGGAGCGCTT 500610 36 75.0 0 ............CA.....C.....A.C.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAAATTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGAGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 241381-241092 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIH01000001.1 Listeria monocytogenes strain FSL L7-0639 NODE_1_length_532836_cov_16.316577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 241380 29 100.0 36 ............................. AATTTTTCCAGATCCTACTTTAGCGGAAGTAATGGC 241315 29 100.0 36 ............................. TTTAGACACTTGAGAAGGAGAGCACGAGAGCTTCTT 241250 29 100.0 36 ............................. CTTGGATGAAATTCTGTAATAGTATTTTGTTTTTGT 241185 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 241119 28 82.8 0 ......A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //