Array 1 1109874-1110754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013683.1 Clostridium botulinum strain AM282 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1109874 29 100.0 36 ............................. TTAACTCCTAAAGATAATCCATTTATATTCATATCT 1109939 29 100.0 37 ............................. ACTACCTATTGCTATTTTAACGAATGTATGATTTCAT 1110005 29 100.0 36 ............................. AAATTATGTTTATAAATGATAAAATAGAAAATAAAC 1110070 29 100.0 36 ............................. TAGAAATAAGAAATAAGGGTGAACAAATAGTCTACG 1110135 29 100.0 36 ............................. GGTTACTGCATATGCGAAGTGTTGCAGGTAAAAATT 1110200 29 100.0 38 ............................. ACGTAAAACTCAAGCAGGGAAAGAAGTGGATAGTGATG 1110267 29 100.0 37 ............................. AATTATTTTACTTTTGCTCCAGGAGATAAAATTGTAA 1110333 29 100.0 37 ............................. ACAAATTTTATATCCTCTGTTTCCAAAGAACATTTAG 1110399 29 100.0 37 ............................. TATCAAATCAGAATGGGAAGTAGCTTAGATGAAACAT 1110465 29 100.0 37 ............................. TTGTATATCTTTTCGCTTAAAGCCAAAGTTTCTTTTA 1110531 29 100.0 36 ............................. ATTTTAAGAGCATGACTAGTAAATATAAAAGTGTGC 1110596 29 100.0 35 ............................. TACTTATATACAATTATTGATGTTTGCTGTACCAT 1110660 29 100.0 37 ............................. GTTTATACAATATTACCTATACTTGCAGAAAACAAAA 1110726 29 93.1 0 ...................GG........ | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.5 37 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTGGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTGGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAAATTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : TCAATATGCTGTGAAGTCTTTTTCTGTTATACCAATATTCTATATACTCAAATATTGAGAACCTAGCGGTATCAAAATCATAATATGTAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGCGAGAAAGGGTTCAATGTAGGCATTATCATAAGGACAATCCTTACCGCTGAAAAAGTGAATTATATTAATTCCTTTAAATATGTTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGACTGCTGTAAAACTAATCAAGGTAGAAAGAAATCTGCCTTGATTTTATCTGTTTCTATAAGTTTGTACATTTATCCTATGAAGGATTTTAAAATTTATTATAGAATACTTAGTGTAGTTAATGAATGAAATTATACATAATCTAATAAATTTTTTCCTAAATAAAAAATGCTTATTTATTTAGGAAAATAAACAGGGGGTTATACTAATGAAGATAATAGTTATTGGACCAAGGGGAAAAATGGGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 92720-93076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013684.1 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 92720 29 100.0 36 ............................. TGACCAATAGTAGCACCGCTTAATCCATGCACATAC 92785 29 100.0 37 ............................. CTATTTAAATACTCTAGTTCCAACAAGGAATAGTCCT 92851 29 100.0 37 ............................. TTAGGATTTAAGAGTAGAGCTCAAAGGTATATATCCA 92917 29 100.0 37 ............................. CAAGTGGAAGTCCTTTCAATATTTTTTTAGTTGTTAA 92983 29 96.6 36 ................G............ TGAGTATTCCAGTTATAGAAATGGGACTATTATTAA 93048 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GAAGGTCAAAGAGTTGAACAAGATACATTTGTTTGTAAGAGATGTTGGCATAAGATGAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTTATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAATATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCATATTTTAATTTTAATTAATAAATTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGACATTTGAGTAAGTTCTATATATTACCCAAAAACACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGG # Right flank : TTGATGATGGATAATTATAGAATTAATATACTATTGCAGTAATAATATAACTATACTATAAGCAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTATAAAAACAAATAAGAACATTTTTATTATATCTTTATTAATTAGCAAACTGTAGTTCCCCCTTTCTATTATTTGGGTTGATTTATTAAATTTTACTTAAATATGTCATAACAAACAACATTTTAGATGCTCTAGCTTGTCTGAGCTATTTTTATTTTCAATATAAAAAAGATTGTGCAAATTAAATTTAGATTAATAATAATTTTTTTAAACACGGTATATTAAAAGAATATATCGTGTTTTTTTATTTTGAGAAATATTACTATATGTCTAATATAAATAAAGCCAAAGTATTATTGTATTCACTAATCCTTTAAATTATATTAGTAAAAAGGAACAAATTAAGTATAAAGGAGGCGCCTTAAATGAATATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //