Array 1 10102-7694 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKP01000008.1 Cronobacter sakazakii strain cro109 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10101 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 10040 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 9979 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 9918 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 9857 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 9796 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 9735 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 9674 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 9613 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 9552 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 9491 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 9430 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 9369 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 9308 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 9247 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 9186 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 9125 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 9064 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 9003 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 8942 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 8881 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 8820 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 8759 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 8698 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 8637 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 8576 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 8515 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 8454 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 8393 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 8332 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 8271 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 8210 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 8149 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 8088 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 8027 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 7966 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 7905 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 7844 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 7783 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 7722 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 124000-124148 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKP01000002.1 Cronobacter sakazakii strain cro109 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124000 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 124060 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 124121 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18652-19718 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKP01000042.1 Cronobacter sakazakii strain cro109 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18652 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 18713 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 18774 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 18835 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 18896 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 18957 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 19018 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 19079 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 19140 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 19201 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 19262 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 19323 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 19384 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 19445 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 19506 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 19568 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 19629 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 19690 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //