Array 1 498851-499246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWH01000001.1 Streptomyces echinoruber strain JCM 5016 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 498851 29 100.0 32 ............................. CGATAAAGTCTTACGCGCGCGTACTACTTTGA 498912 29 100.0 32 ............................. AACCGGCTCGCCGACGCCCTGCAGACCCAGGC 498973 29 100.0 32 ............................. AGCAACACACTCTCCTGGTCAGGTACTTCACT 499034 29 100.0 32 ............................. CCTTGAAAACGGCCAGGGCTACTCGTCGCCCC 499095 29 100.0 32 ............................. TGGCCCGCCGTATCTGGTGCCGCCTCGCCCAA 499156 29 100.0 33 ............................. CGGTCTCGACGACCGCGCCGTGCCCCACCTCCG 499218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 34 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : TCGAGCGGGGCGACAGCGCGCAGATCACCCGGCGGGCTCCCCCACCAAGCCGCCGTACCGCCGTACCAGAGGGCGCCGGACGCGCCACTCCCCCTCATCGACGGGTGCGGCAGGCATTCCCTCCCCGGGCCTCATCTCCCTTACAGAACCGGGGGAAAGCCCTGTCTTCCCTGTGCCGCCACCGCGGCAGCCGCCCCTCACCCTCCCGATCGCCCTTCACCCACACCGGCTGAGCCGGACCGCCCAACCAGCCGAACGGTGCCGAACGACCGCCCCCTTGTCTCCCCTCCCACGTGACTACACGGATGAAATCCAGCCCACCGCTCCTTCCAGGAAAACCGGCCCGATCTTCCCGGCAACCTCTCCGTCACGGCAAAAAGCGCTTAGTATGCACTGCCAACCCCCACGCGACCAGAATGCGAAACTTGCACCACATGTCGGATTCTCAAATAGTGCAACAATACCTGCCCACCGCCCAATAAACACCCAGGTCACGCCCT # Right flank : CTCCCAGAGCACCAATACCTCCCGCGTGCGGCGGCGCCGGCCGTCTCCGCAAGCCCCGTTTCCGGCCGCCGCCCCACCCCTGACCTAATCCTCCGCCAGCCGCGCTCCCCGGCTCTCCGCGATCCGCAGCGCGTCGCCGAGCGCCTCCGTCAGCCGCATGCTCGCGAACCGCAACTCCCGCTCGTCCAGCGCCGGTTGCCGGAGCAGTGTCCGCGCCGCCGCCAGGATCGTCTGCGCCGACTCGATCAGCTCCGCTTCCACCGTGTCCGCGAGGCGGGACAGGCGGCTGTTGGGGTCGTCCGTGCTGAGGTAGCACGGACGACCCTCCGGCGTGGTCCATGGCAGCAGCCGCAAGGGGGTCCCCGTACCGTCGCGCAACACCTGACACCGCTCCTCTCCGATCGGGGATCGGGGATCGGGGATCGAACACCCGAAGTCCCACATTCGAAATCCGGCATTCGGAATTCGAGGTCCGGAACCCAAATCCCGGAAACCGCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15898-12574 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWH01000047.1 Streptomyces echinoruber strain JCM 5016 sequence047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15897 29 100.0 32 ............................. GACACGTAGACGTTGGGGAAGTCGTTGAAAAC 15836 29 100.0 32 ............................. CCCGGCTCGACTACCGGCAGATGCGCCTGGTC 15775 29 100.0 32 ............................. AACAGGTCTTCGCCGTCGCTCGCGTTGACGCC 15714 29 100.0 32 ............................. TAGCCGGGTTCGGGCCTCACCGCGGCGTCTCC 15653 29 100.0 32 ............................. CCTCGCAGCTGCAGCATGGCTCTCTCTTCCGT 15592 29 100.0 32 ............................. GCCTTGGGCTTGCTGATGCGGATCTCCAGGCC 15531 29 100.0 32 ............................. ATGCTCGCCAAGCGGCACGGGTTCACGGCCGT 15470 29 100.0 32 ............................. GCGAACTGGTCGGCCGCGCCGAAGTCGCCCAG 15409 29 100.0 32 ............................. GACTTCACCCGCCTCACCCGGAAGGCCACCAC 15348 29 100.0 32 ............................. TGCCCGTGCTTGGCCGCCCACGCCCGCGCCAC 15287 29 100.0 32 ............................. CTCTGCGCGCCGAGGAGCTTGCGGTCGTCGGC 15226 29 100.0 32 ............................. ATCTGGGCTCAGAACACACCACCTCCCCCGCC 15165 29 100.0 32 ............................. TCCACGACGGACAAGGTCTGGCTGCGCCGGGA 15104 29 100.0 32 ............................. TCGAACGAGACGATGGGCAGGTCAGTGGGAGG 15043 29 96.6 33 ............................A GGCAGTGCTCGGCCCGATCATGCGGCTGATGTT 14981 29 100.0 32 ............................. CTCCCGCGCACACCAACCCCTCCGGGGGGGAC 14920 29 96.6 32 ............................C CTGAATCGGGTTCTCCGCGCTGGGCGCCACCC 14859 29 100.0 32 ............................. GATCTCAAGCGGCTCGACTCCAAGAACCTGGC 14798 29 100.0 32 ............................. GCCGGGGCCTACTCATGTCCGGACGTTGTTGT 14737 29 100.0 32 ............................. ACACGCCGGAGGCCGCGTAAATGCCCGTCTCA 14676 29 100.0 32 ............................. CGTATCCGGATGATCACGATGCTTGGAACATG 14615 29 100.0 32 ............................. ACCGGTTGCGACGGCAGCACCCGGCGCTGCCA 14554 29 100.0 32 ............................. TCTGCCCGGTGCACCCCCCGGTTGACCTTCTC 14493 29 100.0 32 ............................. TCGCCGGGCAGGGTTTCGCCGGGACGTACGTG 14432 29 100.0 32 ............................. GCCGGCTCGTCGGTGATGGCCGGCTTCGGCTT 14371 29 100.0 32 ............................. GCGCCTGACACCCCTTGGGGGCCCCGATGCCC 14310 29 100.0 32 ............................. CTATTGCGATTTGTGGTGGGGTGGGGCACACT 14249 29 100.0 32 ............................. ACCAAGAAGGCCCGCCGCCTGGTGGCGCTGAG 14188 29 100.0 32 ............................. CCGCGGACGCCCTGGGCACCCGCATGGTGGAA 14127 29 100.0 32 ............................. TTCCGCGACAGCCAGGTCGCTGGCCTCATGCA 14066 29 93.1 32 .......................A....T CCATGTTCCTCAGCGGGGCCATCGCCATGATC 14005 29 100.0 32 ............................. AACCCGGAGATCGCCGACTTCTTCGCCCGGCT 13944 29 100.0 32 ............................. CCGACGACGAGCCTGGCCGTGCGGGCGGTGGC 13883 29 100.0 32 ............................. CCGAGAAGGGCAAGAAGAAGCGCATGGGAAGG 13822 29 100.0 32 ............................. TCACAGACTCCGGCACCTCCGGAGTCGCAGAG 13761 29 100.0 32 ............................. GTGACGTGGATCTACCAGCACGCGCCGGAGGA 13700 29 100.0 32 ............................. TACGGCCGCAGGATCGGGGTGAGCAGGGCGCC 13639 29 96.6 32 ........T.................... CTGCGGCCCTTGGAGTTCTGGGGGTGGGCCTG 13578 29 100.0 32 ............................. GAGTCGCAGCAGTTCGCTGCGGACCTGCAGAA 13517 29 100.0 32 ............................. GTCTCGGCGTACGTGCGCGGCCTGGCGACGCG 13456 29 100.0 32 ............................. TCATGAAGCCAGAAGGGGCCTAGGGTGATCGC 13395 29 100.0 32 ............................. TAGCCCGGTTCCTCGTTGTTGAGCATTCCGGC 13334 29 100.0 32 ............................. CAGGCCGCCGCCGGCAAGCTCAAGGCACAGCT 13273 29 89.7 32 GT.C......................... CTCCATGTTGCCGAAGTCGATGGACACGCTTA 13212 29 100.0 32 ............................. TTCCCCGCGTTCGGCGACTTCATCAAGGTGGC 13151 29 100.0 32 ............................. ACGCACCGGCGCGTCCTCGGCACCGCGGCCCT 13090 29 93.1 32 .T......................G.... TTGCCGATGCCGTCGCCGCTCGCGTCGGCGCC 13029 29 89.7 32 ....C..........A.......A..... CCGGAGCCGTCGTACGGCTGGAACTGGGTCGG 12968 29 100.0 32 ............................. CCCCACACGCCGCCGACGTCCGTGCTGTACAT 12907 29 89.7 32 ...C......T...............T.. TAGGGGACACCGTGGAAAATCATGTGCAGCAT 12846 29 89.7 32 ........T.T.G................ GACGACGAGACGTGGAACCGCGCCGACCCGAC 12785 29 100.0 32 ............................. GTGAAGTCCGTCGAGCGGTCCGTCCTGGTCGG 12724 29 100.0 32 ............................. TGATCCGCCGCGAGTTCACCACCGGCAAGGGC 12663 29 86.2 32 T......................AC.T.. CAGGCCCGACTGGCAGGGCTGCGCACCATGCG 12602 29 72.4 0 .T.C.......A....T..A..C.CC... | ========== ====== ====== ====== ============================= ================================= ================== 55 29 98.1 32 CCGGTCCCCGCGCGAGCGGGGGTGATCCG # Left flank : GTGATCTTCCCGATGTCGTGCAGTCCCGCCCAGAAGCACAGCAGTCGGCGGCATGCTGCCGGCTCCCAGCCCAGACGCTCCGACAGACGCTGACGCACCTGCGGCGTCAGCACCACATCCCACAAAGCCCCGGCCACCGCCGCCGTGTCCAGCAGGTGGCAGATCAACGGGTAGGCCGACGGGAGCCTCCGCTCCTTGCCCCACAGGCGTACGTCAACGTCGGCGTCCGGGGCCGGCACAGGGTGCCCGGCGTGCGGCGGTGAAACCTCGTCTTCGGTTGCCATGGCACAGGGCTATCACCCGGGTCTGACAACGAGGCTCGCAAGCACCTCTGGCTGGGCAAACAGTCCATTCGCCAGCTGCGCTGACAGGCACTTGCCAAAATGCCTGGTATGACTCTCGATCGTGCGCCAACGCCTGGGAAGATACCTGTTGTGAACGGGACGCCGACCGATGGTCAAGAAGCGGCAAAGCCAATGCATTGACGCAGGTCAGAAAGT # Right flank : AGGGTCGGCGCACGATTTGCGCCAATTGCCCCCCTTCCTCATACGAGTAGGGCTGCTCCGGCCGCCCTGCCAACTGGCACACCCGGCACGTACCTGTTCCTCGCGCAAACGGGGCACCACGACCTGAACCGGCACACGCCTGAGCGCATAGCTGCCCAACACGCGTCCGGCGATGCACGGGACCGGGACCGGACCGGCCCAGCGGAGCGCTCAGGCCGGTCCCAAGCCCGCGGACTTCAAGCCACGCTCGAAGCCCTCCAAAGCCAATCAGACGTCCGTACGCAGCAGCACGATGAACCGCAGGTCCATGTTCCTCAGCGGGGCCATCGCCATGATCTTCACGCTGACCTCCTCGTCGTGGTGGGCGGGAAGGCGCAGACGCCGGACGTGTCCGTCGGGGTGGATGATGGTCTCGGGTTCGGCCCAGAGTTCGCGCGCCACGGGGTTGCCGCGGAGGATGTCCTCCTTCAGCCGGCGCAGAGCCTCGTTGTCCGGGTGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCCCCGCGCGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25590-26654 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWH01000047.1 Streptomyces echinoruber strain JCM 5016 sequence047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25590 29 100.0 32 ............................. CCCTGGCTGGCCGAGCCAAGCGCCTGGCCGAG 25651 29 100.0 32 ............................. GCGCGCACGCAGGCTGAGCTGGCGATGTACCC 25712 29 100.0 32 ............................. GTTTGGTTTAGAACTTTAGAAACAAAGGTTTC 25773 29 100.0 32 ............................. CGGTGGGGCTCGACCCCGCACCTGTACACGCC 25834 29 100.0 32 ............................. GCGTGGACAGACGACGGCACCCGCCTGATGCC 25895 29 100.0 32 ............................. CAGCAATGTGCTCAAAGAGCCGGGCAACAGCA 25956 29 100.0 32 ............................. CCGCTGCCGTACAGCCAGTGCAGGGAGTCGCG 26017 29 96.6 32 ............................C CGGCCCGTAGCACCGTCACACTGTCCGCGTAC 26078 29 100.0 32 ............................. CGTTCCCCGACTGGACCGGCCAGTGCGGCACC 26139 29 100.0 32 ............................. TGCAAGGGCGCGGGGCAGCCCCCGGCCGGGGA 26200 29 100.0 32 ............................. CTGACCACTCGTCGCAGCGGCGAGGCGTACCT 26261 29 100.0 32 ............................. TCGAGCCCGCTCGTACCGAACGTCTCGGGCTG 26322 29 100.0 32 ............................. CCGTCTCTGGCCCGACCCGCGGCTACTCGAAA 26383 29 100.0 32 ............................. ACCGACCGGGGCGTGGTGGCCATCATGGACTC 26444 29 100.0 32 ............................. CTTGACAACGCGAACGTAGGAAACGCAGCGTG 26505 29 100.0 32 ............................. ACGGCCGGGGCGCGGTAGCCGCTGACTGATCC 26566 29 96.6 32 ...................C......... GCCGGCCGCGCCGGACGGCTGTCGCTGTGGGT 26627 28 86.2 0 ..A...................-..CT.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GTGCTCCCCGCGCGAGCGGGGGTGATCCG # Left flank : CCGACGAACCCGTCACCACCCCCGACCCGGACGAAGAACTCGTCGACCTGTGGGACCCCGTCTCCGGCCCCATCGCCGGCGGCACCAACTACGGCACGGACGCCCCGTGAAGCCGACACCGGGACTCAAGACGCCCCACCCAGGACCGCCATGGCCTCCATGATCACCATCTCCGTCACCGCCGTCCCCGACCACGTCCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCACACCTGTACGTCGGCACCGTCTCCGCCCGCGTCCGCGACGAACTGTGGCAAGCCGTCTCCGGCTGCATCACCGACGGAGTCGGCGTCCTCGTCTACCCCGCGGACAACGAACAGGGCTTCGAACTACGCACCACAGGACCCCAACGCCGCCACCCCGTGGACTTCGACGGCCTCACCCTCATCTCTTTCCACCAAGGCCACAACGCTACGACCCGCCAACCAACCCAAGAAATGGCAAACTGACTACAAAACCCCAGCTCAGG # Right flank : GACGATGCCGCAAACGACGGGGTCGGTGAACTGACGCTCCCCGCGCGAGTGCCACCCTAATTGCTTCTGCAACGTGTCGGGTGGGTGTGCCCACGAGTGGGCACACCCACCCGACGGAGCAGGATCGAGGGAGGTTCAGCCGGGTCCAGCAGGGGGCAAAGGTCCGTTTTTTCGCTGAAATCACAGGTGAGAAGCGTCTCATTTCCGGGTTCGACTCCCCTAGGCTCCACGCTCACAGAGCCCCTCTGACCTGCGGAAACGTGGGTCGGGGGGGCTTTTTGTCGCCGTCGTGTGGGCACCGTGTGCGCACCGAGGACCGGTGTCGGTGGCCGAGGGTGTTGCGCTGCCGGGGGCTGAAGCGCGCGGATGTAAGGGTCTCCTGCGTCGTCCGGTGGCGGGCCGGCGGAGTGCGCGGCGGGAAGACGGCACTGCCGCGGGGCAGGCCTGCCGGACGGGCGGCTTCAAGAAGGTTTCGTCGTGGGCGGCGATTCTCTTCGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 151193-150188 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWH01000010.1 Streptomyces echinoruber strain JCM 5016 sequence010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151192 29 100.0 32 ............................. CGTCCAAGTAATAGGGGGGTCGAGACGACCAG 151131 29 100.0 32 ............................. CGTGATCATCCACGACGCCGCCGGCGCCTTCA 151070 29 100.0 32 ............................. GCTCGGCGTCGTCAAGCTGCCCCCAGTCGACG 151009 29 100.0 32 ............................. TTCGGACAGGGTTACCGACGGTAAACCCGGAA 150948 29 100.0 32 ............................. CTGACCAACACCGCAGAGAACCGGGCCTTGGA 150887 29 100.0 32 ............................. CGGTACACGATCATCCCGAAACCCGGAACTTC 150826 29 100.0 32 ............................. GGCGGCAGCGGCGTGAAACTGGCGCAGGTGCC 150765 29 100.0 32 ............................. TCGTCGACGCGGGTGACGATGCGCCGCACGCC 150704 29 100.0 32 ............................. TTGTCCACGCCGGGGCCGGTCGGCTCGGCCCA 150643 29 100.0 32 ............................. CACAGGCGGACGTTGAGCTGGATCAGGCCGTT 150582 29 100.0 32 ............................. AGTGCGATCACTGCGGCGGCAGCCCGGATGAG 150521 29 100.0 32 ............................. AGCCCATCGGGCCGATCCTGGACGGCCTCGGC 150460 29 100.0 32 ............................. ATCTTCACCTTGTCCACCTCGATCTCGAAGAG 150399 29 100.0 32 ............................. AGGGCCTGGTGGGCAGGATGATCCGGGCCCTC 150338 29 100.0 32 ............................. TCGCCGGCGTCGCCCCACGAGGCGGACCAGCT 150277 29 100.0 32 ............................. AACCTCGATCATGGCGACCAGGACAGCGTCGG 150216 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGGTCCCCGCGCACGCGGGGCTGATCCC # Left flank : ACGGCGACACCGAGAACGGACCCCACTTGAGTGAGGAACCGATCTGGTGACCGTCATCGTGCTCGCCAACTGCCCCGCCGGACTACGCGGCTTCCTCACCCGCTGGCTGCTCGAAATATCCCCGGGCGTCTTCCTCGGCTCCCCCACTGCCCGCGTACGCGACATCCTCTGGGAAGAAGTCCGCCGCTACCGAGGCCAGGGCCGCGCCCTGCTCGCCTACCAGACCGACAACGAGCAAGGATTCACCTTCGCCACCCACGAACACGCCTGGCACCCCACCGACCACGAAGGCGTCACCCTCCTCCACCGCCCCTCTCCCCACACACCAGCACCCACCACCCCTCAACCCGAACCCGGACGCCAGGGGTGGAGCAAGGCAGCCAAGAGACGGCGTTTCCGGAGCACTTGACAGCATGAAACCCGATTTATGAATTATGCCCGTTTCTCTAAAAGGAAGTACAACTGGGTATCCCTCTAAGTAAAGCCGCACGTCACAGCCT # Right flank : GCGCGCCGGGGGCGTACGGGCCGGGCTGTCGTTGTGAGGTCTCAGGACTTCCTTGACGGTTTGTCGTCAGGAGATCCTTGACGGTCCTTCTGGGTGCCCATGCCTTTGACGTAGAGCCTGGTGATCGGCCCGAGGTTCTTGCGGGGCCTGACAGCGAGTTCGTCCTCCCCATGCAGGATCCGGTAGTGGGTGTCCTCGATGACCACGGTGACGATCTTTCCCGCATGCCGCGGGCCGAGCTTGATGAACTGACCGTTGATCATGAAGCGGCCGCTCGCATGCACCTTGCGCTGGGCCGCGATGGCCCCGGCCGGCAGGGGCGGAGGCAGCAGCGGAGACATCTCCGTCCGTGCCCCCTGGATCTGCCCCAGACGGTCGGCCGGAACGGGGCAGGGCCACGTCCCCATCAGAGCGTTGTCGGCGTCCCACCGGGCCCCGTTGAGCAGATGCTGCAGGCCCGCCGGATCGCGGTGGCCGGCCCATTCGGCCAGCTGCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 147383-146374 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWH01000009.1 Streptomyces echinoruber strain JCM 5016 sequence009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 147382 33 87.9 28 .............................GTGT CGATGCGGACGTAGGAGTAGGGCTGGCC 147321 33 93.9 28 .............................C.G. CGCCCGGCTCGCCCACCCCCCCGAGACA 147260 33 97.0 28 ................................G GCGGGCTCGGGCCGGTGGTCGCTCACGT 147199 33 90.9 28 .............................CGG. GGCCGACGCCGCCGACGCCGCCGACGCC 147138 33 100.0 28 ................................. AGGGGTGTCTGATACGCGGCTCACCGGG 147077 33 90.9 28 ............................CCG.. TGCTTCCGTCCGGTCTCTTTCCCACCGC 147016 33 90.9 28 ............................AC.A. GCCCGCGTCCACCAGGTAGGTGCGCCCC 146955 33 87.9 28 .............................CAGG AGGCGGTGCGCTACCAGCGTCGAGAGGA 146894 33 87.9 28 ............................A.TGA CGGCCTGCGTGAGTCCCTTGGACATGCC 146833 33 97.0 24 ...............................T. GATGATCACGCACTCTCGAACATC ATGC [146801] 146772 33 90.9 28 .............................T.GG TGGGCATGACCGGGGTCTCGCTCATGAT 146711 33 90.9 28 ...T.........................C..G CGCCGACTACTGCGACGCCATCGCACAC 146650 33 100.0 28 ................................. GGGGGTGCGGGCCGCGGTCCACGGCCGC 146589 33 90.9 28 .............................CG.A CTTCCGCAAGTCCGACCCGAACGCCGTC 146528 33 90.9 28 .............................GTG. CGATGCCGCTCTCGCCACGCAACCACCC 146467 33 90.9 28 .............................C.GT TCTCCAGGTCCCGGCGGACCGAGGTGGC 146406 33 87.9 0 .............................TTGA | ========== ====== ====== ====== ================================= ============================ ================== 17 33 92.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCC # Left flank : CGAAGCGGCGCACCAAGGTGCTCGCTGCCGTGCCGGGCGCAGAACTGGAAGCCCGAGAGCTTACCGATGTCATGCAACCCGGCGCACAACCCCACCACCGCACGCGCTCTGTCTGGTTCGGCCGCGAGCCCCAACCCGTCCGCGATGCTCCGCCGCTGGTTGTCCGACAGGTACACGTCCCACAGATGCAACGCCATGGCAGCCGCATCGAGGAGATGTCTGACCAGCGGGTACGGCGGAAGCTCCGGATCCAGCCCGCGCGCCTTTCCCCAGACCGACTCGTCCGGCTCCTCCCCCACCGCAGACGACATAACCGCCCCCCTCTGGATCCCACCGTTCACGACCTCTGTGCGTCACGGATCGAAGCACACGCCACTGACACTGCCTCCGGCATGCGGGAACAACTAGAGTGCTGACGTGATCTGCCCGCCACCGCGCCTTGAGCCCGACACTCAGGCAAAGAAACGGCAAAGCGGTTGCTAAGCTGCAGGTCAGAAAGC # Right flank : GGCCGCCGGGCCGCTGCCGGTCTCCTCCGTCGCGCTGATTGCCGCGGTCCGCAACGTCGGCGCCCCCACGCCCAACTCGTCCCGCTCGTTGAGAACCTCAACACCACCACCGACGCAATGCGCGCCGCGACCGCCCGGCTGGGCTGGGAGGTGAAGGACGGGCGGATGCGGGGCCGTTCGTCGGCGGCCGGGCTGCGCTGGGACGAGGCCCCTCCCCTGCCTCTGCCGGTCTCTCTCCGGGTGTCATCGGTGCAGGTCAGCGCGTCGACGACAACGACGACGCCAGTGGGGAAGGGACTGAGGAAGGGGTGCGTGTGGTGCGCACCGATGGCGGGTTGATCATCTACGACCTCGCCGGCACCCACCGCCGGCACGGCACTGTCACGCAGCAGTCCGGCTGCTTTCCCGCGCGCCTGTTCGACGCATGGTCCCGATCGGGTGACAACCAGTTCTTTATGGCAACCACACATCAGATACACGTGTCAGATACACGCACACCA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 157076-158329 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMWH01000009.1 Streptomyces echinoruber strain JCM 5016 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 157076 33 90.9 28 .............................GT.C TGTCGCGGTGCGGGTCGGCCGGGTCGTT 157137 33 97.0 28 .............................C... CCTGCCGGAGGGCGCTCACCACGCTGTC 157198 33 90.9 28 .............................AA.T GCACGTGCCCGTCTCTGATCGCGGAGCG 157259 33 93.9 28 .............................CG.. AGGCGGTGTGCTACCAGCGTCGAGAGGA 157320 33 87.9 28 .............................ATCA CCGTCAACACCTCGTCTCAGGTGTACTC 157381 33 90.9 28 ............................A.A.A GGAGCCCCTCCGGCGCGTGGGGGTGGGA 157442 33 87.9 28 .............................CGAT GTGAGCACTGCTGCTTGTCCCCGATTTC 157503 33 97.0 28 ...............................C. GGTCGATAGTGGCGATGTAGTGCTGGCG 157564 33 97.0 28 ................................C CGCCCTCGTCTAGCGGGACGCTGAAGCT 157625 33 93.9 28 .............................A..T GGTGGAACTGGGCGACCGCGCCCTCATA 157686 33 90.9 28 ..............................TCT CTGGGTCCAGCTCCGCCGCCCTCGACCG 157747 33 90.9 28 .............................ATC. ATCCGGACTGGAACCCGGCGTGGCCGGC 157808 33 93.9 28 .............................CA.. CCAAGTGGTTGCCGATGCGGGGGTTGTA 157869 33 100.0 28 ................................. TACGGCGACTCTAAATAGGCGTTAGGCC 157930 33 87.9 28 .............................AACA CCTCGAGGTCCATGCCGCGGCAGGCGGC 157991 33 90.9 28 .............................C.CT GCGCCTGCTGCTCCAGTCCCGTGCCCCA G [158013] 158053 33 93.9 28 .............................C..C ACCGTGCCCGCCAAGACCGGCGCCCGCT 158114 33 93.9 28 ...............................CA GCCCCTGACGGTGCAACGCGTCCACCGC 158175 33 90.9 28 .............................A.CT ACCAGGCCCTCAAGGACAAGGGCCTGCC 158236 33 87.9 28 .................A...........GG.A CGAGGGCGGCCCAGGAGCGCTTCTCCTT 158297 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================ ================== 21 33 92.8 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGG # Left flank : CGGAGACGTCCAAACCCTCCTGACACCCAAGCGGACGGACACCTCCACCACTCCTGCCGACGCGGAGGAACGCTCCGAGCGACGCGACGTGGACATGGTCCACCTGTGGGATCCCAAGGCAGGCGTCCTGCCGGCCGGAGTCAACTACGCATCGGGTGGTACGTGATGCCGACCATGGTGGTGATCGCCACGACAGCCGTGCCCGATCACCTGCGCGGTGCCCTGAGCCGCTGGACCAGCGAAGTCGTGCCCGGAATCTTCGTGGGCGCCGTATCGGCCCGCGTACGCGACCAACTCTGGCAAGCCGTCACCGAAACCGTCGGCAACGGTGCCGCCGTCCTCGTCCACCCCGCTCCGACAGAACAGGGCTATGCCATCCGTACCGCAGGCACTCGCCGCCGCGTCCCCATCGACTTCGACGGCCTCACCCTCATCCGCATGACAGCCGCCCCCAAAGTAAACAAAGAGCAAAGTCCTTCTTAAAGTGCAGGTCGCGAAGG # Right flank : GCCTTTCCATGGGCAGGTCGTAGACATCGTGTCCGGCTTTGAGATCTCCGAGTTCCCAGGTGACGTCGGTAAGGGAGCAGGTCAGGTGGGTGGGGCGTCGTTCCACGCGTGCTGGCGGGTGATGGTGCTGGTGGTGTCGATGCTGGCGCCTTGGCCGAGGGCGGGCAGGTGCGCGCCGTCGGGGCGTTGGGCGGTGGGCGGGGTGCGGAGGGCGCGACTGTGGTGGTCGGCGCTGGTGCCGGTGGCCGGCTCGATGGGGGCGAGTTCGTAGGTGATGCGGCGCAGGCGTGGCTTGAGGCTCTTGTCGGTGTTCTCGGGCAGCTTCCATGCGAAGTGCACGCGGGTTGGGATTCGCCGTCGTCGTCGTCATTCGCCTCCGGTGTTCGTCACCATCCCGACCAGCCCGGTCGTGCGCGTCGGCCGAAGATCAGGCCGCGGGGTTCGGGCGGTGGTGTGGTGCCGGGGCGCAGGGGCAGGGCGAGGAGCATGCCGGCGAGGAA # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //