Array 1 41947-45759 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOV01000004.1 Streptococcus sanguinis strain BCA9 D8820_contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 41947 32 100.0 34 ................................ TGTCTTGCTACCTCGCTCTTGCTCTAGTGCTTAC 42013 32 100.0 33 ................................ TGGGTATGAGCCTGCCAGGCTCCTCTTCTCACC 42078 32 100.0 35 ................................ AATGTTAGGGTTAAATTCTCTTGGTGTTGACAAAG 42145 32 100.0 34 ................................ AAGTAAATCTGCTGGTATAGATTTTAACCACTCA 42211 32 100.0 36 ................................ TATAAACGTCAAACCATAAAGCGTAGATGGGCTTGT 42279 32 100.0 34 ................................ ACAAATAAGCTGGGGGTGTTAGATAATGATGCCT 42345 32 100.0 35 ................................ TGTATAAAATCAGTAGGATTACTTTTGGTATGAGA 42412 32 100.0 36 ................................ CTCTAGAATGGTGTTTTGTAAAATCACCTACAGACA 42480 32 100.0 34 ................................ TAAAAAACTATTGGATAAATACTATCCTTATATT 42546 32 100.0 34 ................................ ATCATCTTATCTTTCAAAAAAGCCTAGAGGGATT 42612 32 100.0 35 ................................ TTTCATTAACCACTGATGAATAGCGTAACTCTCAA 42679 32 100.0 34 ................................ CGTATTGGACGTTTACTGGTGCCAGGTCTACTCC 42745 32 100.0 34 ................................ TGATGACGTAGCCCTTGTCTCAGAAGAAGTGTTT 42811 32 100.0 34 ................................ TTGTACCCTATTTTACCAGATTATAGGAGAAAAA 42877 32 100.0 34 ................................ AAATGCATCAGTTGACGCAGAAAAACGGGGATTT 42943 32 100.0 34 ................................ CAAATCTAGCCAGAACTTGATAGTCGTCACATAC 43009 32 100.0 34 ................................ TCTATTGTTACAAATCCTGATGATGAAGATAAAA 43075 32 100.0 35 ................................ TTATCCCTAAAAAATTTGTAGACCAAAACGACCTT 43142 32 100.0 34 ................................ TAGTATTTTATTTTGGTATTTTTGGATTGTGTTT 43208 32 100.0 34 ................................ CAAATATGATTAAATACACAGTACCTAAAATCAT 43274 32 100.0 35 ................................ TTTGAGTTCAGACAAGTTCATCAAGATACATGTCA 43341 32 100.0 33 ................................ AGGAAGGAAAAGATGAAAAAAGGAGCCTTGAGA 43406 32 100.0 34 ................................ ACCTATAAGTCTAAAAATATAACTCACGCGCAAT 43472 32 100.0 33 ................................ TAAGTTTCTGTTCACATTTGACCCCTTGTCTCG 43537 32 100.0 34 ................................ TATGAGTTAGAAAGACTATATTTAAGAAAATTCA 43603 32 100.0 34 ................................ AGACCTAAAATGGGTTGATGAAATGGATAACATT 43669 32 100.0 34 ................................ TTTGTTGCCAATGTAAGCATTGATGTTATTGAAA 43735 32 100.0 35 ................................ TCTTTTTGGCTGGGTAAACCATTCAAGGGGCGCGT 43802 32 100.0 34 ................................ ACGTTAGTTTGGATAGAATTGAGTTGGAAAAAGA 43868 32 100.0 35 ................................ AAAGTTTGGAATGAGGAAGAAAAAGGTTGAGATGA 43935 32 100.0 35 ................................ CTCTTTAAGTCGCAACAAGTGGTCAAAACCTCGAA 44002 32 100.0 34 ................................ TTGTTCATTTGTACCACCCTCGATTATCTCGCCT 44068 32 100.0 35 ................................ TCCAACAGCACCTGTGACAACTGAATCTGGAGTCC 44135 32 100.0 34 ................................ TTGACAATACTATTGTATCACGACCAAAAGCCAG 44201 32 100.0 35 ................................ TAAAACGGCAATAACCGTTGCAAACCCCAACATCG 44268 32 100.0 33 ................................ TTGTTGCTCCTTGTCCTTAATAGGCTCTCCAGT 44333 32 100.0 34 ................................ TTTAGGTTTTCAAAACAATAAATACAGTAATTAC 44399 32 100.0 34 ................................ TCTCAGCGGCTCAATTTATTGCTGCTGATTATGA 44465 32 100.0 34 ................................ TTTGGATGTAAGACCGCTCTTTTTGCTTAATTGA 44531 32 100.0 34 ................................ TGCTCAATCGTCGTGATTGTGCCGTCTGCATTGT 44597 32 100.0 35 ................................ CGACATTCGACTCTTTCCCAAGGTCGTCCAATACC 44664 32 100.0 35 ................................ TTGCCGACAATCTCCGCATAATAACCGGTAATCGT 44731 32 100.0 35 ................................ CAAAAAGCCTAAGCGCAATTCCAATGAGTTGATTT 44798 32 100.0 34 ................................ TGCTTGGTGCCTGCCACTACTAACTCTAAATATA 44864 32 100.0 35 ................................ AGGTGTTATCATATTAATTTTTTTACTTTGTTTTC 44931 32 100.0 34 ................................ TAAATTAAATCTTTATTTTTTAATCTTTTCTAAG 44997 32 100.0 34 ................................ AAACCAAGAATAGATGGCAAAAACTAGTAAATTT 45063 32 100.0 35 ................................ AGGAAGTGAGGAAGAGGACGCAAATATTAGGAATC 45130 32 100.0 35 ................................ AGATTACTCCACTGAGACGGAACTTTAAAAAGTGG 45197 32 100.0 34 ................................ ATCTACAATTAGAATGTTACAGTCTGCTAGATTA 45263 32 100.0 35 ................................ ACGAGTTAGATTTTTAATATTTCTTGTAAACTCAC 45330 32 100.0 35 ................................ TTTTAGGTCTTGTTCTTTTCGATTTCCTTACCGGT 45397 32 100.0 34 ................................ AATTTTGTTACAGTTGATAATTTTGTGAAAACAA 45463 32 100.0 35 ................................ TATGATGCAGGACAAGTTCGCAAGGATAAAGTCAT 45530 32 100.0 32 ................................ AATATTAGCAAGAATATCATCTACTATGCCAT 45594 32 100.0 36 ................................ AGTAGACCCAAATAGAACAAAATCATGCTCAATCAT 45662 32 100.0 34 ................................ TAAAATAAAAAACCTTGACCGAAGCCAAGGATTG 45728 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ==================================== ================== 58 32 99.9 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : CAAGACAATCCGTGGAGAATTGGAATCCTATCCGCCGTTTTTAATATAGGAGGCAGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGAAAGGCAGGAAAAGACTGCGTCATGTAGCAAAATTATGTGTTGATTACGGTCAACGCGTTCAGAATTCAGTCTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAGGCTAAGCTTTTGAGTATTATTGACACTGAGTCGGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTGATACAAGTTATGATCCTGATATAGGTGTATTACTCCTTTAAATTGCTTAGTGCGAATAGTGGTTGCTCATAAAAAAAGTAGGGCTTTCGCGCGAAAAATAAATAAAAACAAGGTAAAAATTCAAAATTCTGGAAGAGTTTTCTTTCCTCGAAAGATAATTTTTGCCTAAAACAGTGCAACTACGCGCT # Right flank : TATCTTTAGCCTTAAAGTAAAGAGCAATCAGTCCTGTCGCTCCCTATATTTAGCTTTCTAGAGGAGAGTAAAGTGGAGAACTAATAATGTACGAAATGCTATTAAAAATAATCGAATATACTGCATTCGAAAAGAGACCTAAATTTTAGGTCTCTTATTCTCTATTTCCCTAAGCAAAATTGGCTGAAGAGTTGGGTGATGAGTTCGTCTGGTGCGGCGTCACCAGTGATTTCGCCGAGGATTTCCCAGGTGCGGGTCATATCGACTTGGAGAAGATCTACCGGCATACCCATTTCCAAGCCTTGGTTGACGGCTTGCAGGCTTTCTAGGGCTTTTTCAATCAAGGAAATGTGGCGGGCGTTGGACAGGTAGGTGGCGTCTTGTTCAACGATACCAGCATTTTCAAAGAAGAGTTGATTGATGCGTTCTTCAATTTTATCGATATTTTGATTGTGAAGGACAGAAATCTTGATGACATCAGTTGGCAGCAGGTCCAGCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //