Array 1 100846-101212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000004.1 Listeria seeligeri strain FSL L7-1348 NODE_4_length_238977_cov_35.386233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 100846 36 100.0 30 .................................... TTTGGCGTAGTGAGTTATATCGAGGCGCAG 100912 36 100.0 30 .................................... CAGAAAAATAATTGATAGCTGGATATGGCA 100978 36 100.0 30 .................................... GATAGCTTCCATGCAATCGGCGGGGACTGT 101044 36 100.0 30 .................................... AATTATTCCGCAATTTGTGGCTGATGCAAT 101110 36 100.0 30 .................................... AATATTGATATAGTCTCTGCTGATACAATG 101176 36 88.9 0 ...........................A..AA..G. | G [101209] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : AGCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACACCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTGATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATTCTTCTATTAACGTCCTTTGCGAACGTCATTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : CTTTAAAAGAATTACTTCATCGTTAATAGCGTTCTTACTAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGTTGGAGTTTATCAATTTTTAAATGATGATTGGTTTGATATAGTGGTTTAAATGTCACTTCCATTCCATGAGAGCTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTACGATCATAAGAAAGTACATCTCGAGCATCGTCAAATAATTCTAAAATAGAGTTCCCTAACTGTCCGTTAAGGTAATTAAAATGTGAAATTTTATTTCGGTTTTTTTTCAATGGCCAAACAAACATTTCCAAGTGATTTAAGGTTGAAAGTAATAGCTGAAGATTATTTTGTAGTTGTTCATTTTCTTTTACGACTACACATTCTGGTTCAGAGGTATCTTTAATATTATATAACTCATGACGTTTATAGTTTTTATTCCTAAACCCTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 104552-104917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000004.1 Listeria seeligeri strain FSL L7-1348 NODE_4_length_238977_cov_35.386233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104552 36 100.0 30 .................................... TTAGAAGAGAGAAAAGAAGAATTGTTATAA C [104581] 104619 36 100.0 30 .................................... ACGCAAACCAATGAAGTGATAGCCAAAAGA 104685 36 100.0 30 .................................... TACTGTGTCCACCAATATCTGAAACGACCT 104751 36 100.0 30 .................................... ACAGATGGGCGAAACAGCGTGACTATTTAC 104817 36 100.0 30 .................................... CACTATCAACCCAAGTCGATGATTATGAGA 104883 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAATTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACGCTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATTAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACCAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGATAAAGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGACTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 191286-191585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000007.1 Listeria seeligeri strain FSL L7-1348 NODE_7_length_191626_cov_38.921112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 191286 36 100.0 30 .................................... TATTTTTTTCTCTAATACCGTTTCCTCCAA 191352 36 100.0 30 .................................... AATACGTAACAAACATGGTATTGTTACTCA 191418 36 100.0 30 .................................... ATATTTTCGCATGAAAAGTTAAACTTGCAT 191484 36 100.0 30 .................................... AGAGAACTCATGACCATTCGTGTCGTCGAT 191550 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCAAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : TATTTTTTTCTCTAATACCGTTTCCTCCAAGTTTTAGAGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 42-1001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000014.1 Listeria seeligeri strain FSL L7-1348 NODE_14_length_6310_cov_40.878229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... CTCACGTTGTAACTCCTTTAATTCCCACAA 108 36 100.0 30 .................................... TCCGAAATTAATTGGTTATGAAACAGTGAT 174 36 100.0 30 .................................... AAATCAGGCGATGATTAAATCTCAGTATCC 240 36 100.0 30 .................................... TTGCACACATCATGATGTGCGGAAGTATAA 306 36 100.0 30 .................................... TGACGATACTTTCAACATCTGTTTGCGCCT 372 36 100.0 30 .................................... ACTTAGTAATTTTTGAACATCGGAATTATT 438 36 100.0 30 .................................... AAGTTTTCTGGTCTAATTTCCCGTACTTCT 504 36 100.0 30 .................................... AGCGGGTGCTGCGTTGCCACTAGTGAGCGA 570 36 100.0 30 .................................... CCCAGCTACTGGGAACTCCTGTAAGACCTA 636 36 100.0 30 .................................... TTGTTTTTGACATAAAAAATAAGCCTTATT 702 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 768 36 100.0 30 .................................... ATATATTTCGAGCGCTTTTTTAACATCACG 834 36 100.0 30 .................................... CTATTCAAGAAGAATTGTTGCCGGCAACAT 900 36 100.0 30 .................................... AGTTGGAAGAAAAGCGAATTATGGGCTATA 966 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GCTACCAAAACATATTTTCGCATGAAAAGTTAAACTTGCATG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTGAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38413-38956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000005.1 Listeria seeligeri strain FSL L7-1348 NODE_5_length_227538_cov_32.534096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 38413 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 38479 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 38542 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 38606 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 38670 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 38736 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 38799 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 38863 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 38928 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 45178-46692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000005.1 Listeria seeligeri strain FSL L7-1348 NODE_5_length_227538_cov_32.534096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 45178 29 100.0 37 ............................. TTCTTCTTCCTCTCCTTCCTTTAGATACTCTCCCTCT 45244 29 100.0 35 ............................. ATCGCTTTTAATCCCGGTTGAATAACATCCCAATC 45308 29 100.0 36 ............................. ATTAAAGTCCGGTCGACCTCTTTACTCTCAGCAATC 45373 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTTCTTTCACTTTTAA 45437 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 45502 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 45566 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 45629 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 45693 29 100.0 36 ............................. CCCTTTGTTTTCGCCATTCCGGCGATAGTAAACACC 45758 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 45822 29 100.0 36 ............................. TTCTCTTGCTGTAACTGATGAATCTCATCTGTAAGT 45887 29 100.0 37 ............................. TATTTATAACGCCAATTACCTGTTTCAGTCGCTACAG 45953 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 46018 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 46083 29 100.0 35 ............................. AAACGACGCGCTGTATTATTAGCTTCTTTGAAATT 46147 29 100.0 35 ............................. GTTAAAATATGCTCTGATTGTTTTATGACTGTTTT 46211 29 100.0 36 ............................. ATTATTATTTATTTTCGCTTGAAATAGCGTAGGGAA 46276 29 100.0 36 ............................. AAAACAAGCGTAGAAAATAAAGATGAATATTTTCTT 46341 29 96.6 34 ................T............ GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 46404 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 46468 29 100.0 36 ............................. ACTCACGTTTGATTTCTATCTTCACAAAAGCTTTGC 46533 29 100.0 36 ............................. TAGATACATCTACAACACGCAAAAGCGTCCCAACAG 46598 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 46663 29 86.2 0 ........C....C..A...........G | T [46689] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 55307-56688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSC010000005.1 Listeria seeligeri strain FSL L7-1348 NODE_5_length_227538_cov_32.534096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55307 29 100.0 36 ............................. AACTGATAGAAGTCATCAGTTGTTTGCGGATATAAT 55372 29 100.0 37 ............................. ATGGAAATTATCCACAAAAAATGGGGAACTGGCTTTT 55438 29 100.0 35 ............................. ATTTCACTAAATTTCCCGGCGAAGTATACACCGTA 55502 29 100.0 36 ............................. TTCGTTAAGAGGATCTTGTGCCTTCGTCAGATTCCT 55567 29 100.0 35 ............................. ACAGGTATCGGCTCAACAGTTTTAGAGAGCATCAC 55631 29 100.0 35 ............................. CTATCAGTTTCTTCCTCCATTGTTGTTCCATCTTC 55695 29 100.0 34 ............................. ATTTCAAAGTTCATTTAATTTCCTCCTCTAAATC 55758 29 100.0 34 ............................. ATATGATTAGAGAAAGAAAAATAGAACCATTTTA 55821 29 100.0 34 ............................. AAATATTTAGTTTCTTGGCTGATCATGCTTTGAC 55884 29 100.0 36 ............................. TGAAAATTAAAATAAACGGAGATTACGTAATCAGAG 55949 29 100.0 35 ............................. AAGACCGGAAAAGTTTCTAGCAATGCGCCGGAAGT 56013 29 100.0 36 ............................. CTTTATCCGTTCCGGCTAAAGTAGGCGATATTTTGC 56078 29 100.0 35 ............................. GTTACTAATGACCATCCGGCCGAACCAGTTAATGC 56142 29 100.0 38 ............................. TTCGGTCTAGTTCTAGCTTTTCTACCCAGTTTGGATTT 56209 29 100.0 35 ............................. TATCAAACTCAGTTGCTGGCACTAAATTATAGACC 56273 29 100.0 34 ............................. ACATGTCGTTTTTAAAATTACGAAAAGCGGATTT 56336 29 100.0 36 ............................. GAAAATAAGAAATGAGGTCGAAACATGCCGAATACA 56401 29 100.0 36 ............................. AACCATCTGGTAGATCAGTGGGGAATGGAATTTTGT 56466 29 100.0 36 ............................. AAATATCATTTGACTGATGAAGAAATTCATGAAGTA 56531 29 96.6 34 .........................G... TGTGGTAGATAGCATCGCCAAGGGAGGTAAGTCG 56594 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 56660 29 75.9 0 .......C.G.....CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.8 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTAGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //