Array 1 57-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREM010000020.1 Enterococcus sp. 669A scaffold1.20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 57 29 100.0 35 ............................. TCAGCAGACACGCCGCCGCTCACAAGGATGCCCAT 121 29 100.0 37 ............................. AATAACACGGATTGAAAACATGACGGGATTTGTCGAG 187 29 100.0 36 ............................. AGCTGCCTGCCTAAGATACTTGCTTTCTCGGTTAGA 252 29 100.0 36 ............................. GTCGAATAAGTGATAGTTCATATCCTGTGAATTGAA 317 29 100.0 36 ............................. TCAGGTACTAAGGAGGTGTCAACTATGCTAGTATCA 382 29 100.0 36 ............................. AATTTGACCATGAGTGCCTTGAAGCTGAACTACGAG 447 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 36 ATTTACATTCCACTCTTTTAGATTAAGAC # Left flank : CACTCTTTTAGATTAAGACGCGTTGTATGAATCACTTGATAGGCAACCCAGACGGGA # Right flank : CCCCGCATCTAATTAGCCTCGTCAAATCAAGGCGAAAACAACCATTTCTGTCGACCGCTCAAATTCCAGCTCGTCATTTACCAAAGATAACATCTGATTTCTCAAAAATCCTTCTCTAACAAGCTTTTCGGCAGCTGTCGTAACTGGGGTGTTTTAGTGTTATTGACGGTCGACAGATTGATAATTTGCGCTATTTAAATAGGAAGAAACTCGTCATTTTTCTGAATTTACTTCTTAGGCATGACCATCAAGCGGTCCGCGGTTAGTTCGTGGATATCGATTGGTCGGGTGTAGAATTGGGTCAGGTTTTCTTCGGTGATCAATTCTTCACGGGTCCCTTGCTTGAAGATTTTGCCGTCTCTGACCATCAGAACGTGGCTGATTAATGGCAAGATTTCTTCGGTGTGATGGGTAACATACAAAAGACTTGGCGGGTTTTCACCTTGTTTGATTTGTTGGATGCGTTCCAATAAATCTTCGCGGGCAAATAAGTCCAGTCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTCTTTTAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 104475-100878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREM010000001.1 Enterococcus sp. 669A scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 104474 29 96.6 36 ..............G.............. TACATAACGTCTGAGAATTGATCATTAGAGGGTGCT 104409 29 96.6 37 ..............G.............. TTTCAAAAAGATATTTACCTGTTTCATTATCGTAAAC 104343 29 96.6 35 ..............G.............. TCATTTTGGTTGTTTTGATGAAGTGCACGATTTCA 104279 29 96.6 35 ..............G.............. ATTGCGCTTTTTGTGCGTCCATCTCGTTTTCAACT 104215 29 96.6 36 ..............G.............. TAAAAAGCAAGCAATGCGCTATTCTGGCTAGTGTCG 104150 29 96.6 35 ..............G.............. CAAGACAAGATTAATTTAGATGTAGATAATACAAT 104086 29 96.6 36 ..............G.............. GTACATGACACGCCGACAGAACGTTGATATGACGCG 104021 29 96.6 36 ..............G.............. CGCTACAAGCTGGTGGAGGGCAAGCAAGGCCGCCGC 103956 29 96.6 37 ..............G.............. ACTCTTACTGCGTCGCTGCTAATATCTAGTGAGACCA 103890 29 96.6 35 ..............G.............. GTACACGCGCCTCGATACTGTTCAAGTCGCTCACG 103826 29 96.6 36 ..............G.............. GCGCGTTGCGAATCTCAAAGTCATTTATGAGCCGAT 103761 29 96.6 36 ..............G.............. TTCTGCTGGACGGTACGGCTGCAAGGTCAAGCCGCC 103696 29 96.6 36 ..............G.............. TTCAAGATTCCTTTTCGTTGTGTAATTGACGCTCTC 103631 29 96.6 36 ..............A.............. GGGCGAAGCTGCTTGGTTTGGGTCATGATGGCCAAT 103566 29 96.6 35 ..............A.............. GCTTGATAGCAGCTGCTAACGTTTCCGGATTGTCA 103502 29 96.6 36 ..............A.............. TTTTAAACTCAACTCCTTGATACAGCACATAAAATT 103437 29 96.6 37 ..............A.............. CAATTCGGCTAAGTCATCAACTGTAGCAAAAGGCTTC 103371 29 96.6 36 ..............A.............. AAGTTCACACCTTTTGCAGTCTTACGTTGTTTCTTG 103306 29 96.6 37 ..............G.............. ACAGATACATTAGATCAGCGTAGAGAGCGGCTTATCG 103240 29 96.6 36 ..............G.............. ACCTTACGGACTCTCGTGTTACCCATCCGCGCCACG 103175 29 96.6 37 ..............G.............. TCCTTACTATCTCATCAATATAAAAGCGGCTATCTCG 103109 29 96.6 36 ..............G.............. TAAAGAGGTACATCTAATAGACCTATCCTTAGTGTT 103044 29 100.0 36 ............................. CAGTTCAAGATGCTTACCGTAACAGGTAGAACTAGT 102979 29 100.0 36 ............................. CCTCCTTAGAGGTGGCGTATAACGTGATATTTTTAA 102914 29 100.0 36 ............................. CAGGTAGAAAAAGAAGTACTTACATTAGACAATGAG 102849 29 100.0 35 ............................. TATTTATATTATATCGGTAGTAGCGCAACGTACTC 102785 29 100.0 35 ............................. TCGCTTGATGTGACCGTAACCCTTGAAGAATTGTT 102721 29 100.0 36 ............................. GGCGATTAATCGGACGATAAACAATTATAGGATTAA 102656 29 100.0 36 ............................. TAGAAAATCATCGATATTACTTTCTGTGATAGTACT 102591 29 100.0 35 ............................. AACGCTGACGAATTATGCGCAAAAAGGGACGCTAC 102527 29 100.0 35 ............................. TGCTCTTGCTTTTCTTGTCGAGACATCCAGCATTT 102463 29 100.0 37 ............................. ACATCCAACAGTCGTTCCCAAACTGGGATCATAACAC 102397 29 100.0 37 ............................. GAATCATCAGCTGGCAATAAGAAAAGAAGTCATCACG 102331 29 100.0 37 ............................. TCGATGCAAGGCGTGTTTTATCTGAAGTAGTGAACAA 102265 29 100.0 35 ............................. ATCTGAAACGACTGAGGCATCTTATTCAACGACTC 102201 29 100.0 36 ............................. GCGAATTGTTAACGTCTCAGAGGAGGCAATATCACA 102136 29 100.0 37 ............................. GCGTTTTTGAATAAGCTTCTTTTTCTTTTGAAAATAG 102070 29 100.0 35 ............................. ATTGATTGATTCAAACAAAGAAGGGTTCGCAGCAG 102006 29 100.0 36 ............................. GCTGATCCCAGTGAGGCTCCCTCATGCCCGGCTACA 101941 29 100.0 36 ............................. TTCCTAGCTTCGCTGCATTCTCAAAGACTCCCACTG 101876 29 100.0 35 ............................. TGCAGTAGCAAGCAAGGCAGATAGTGATGATCAGG 101812 29 100.0 35 ............................. CTTAAAGGATCTCGCAAGAGAAAGGATTGATTAGA 101748 29 100.0 36 ............................. ACAGTTAGCACACTGGACTTGCAACAGGCAGAAGTC 101683 29 100.0 36 ............................. GATCAAGAATATCGGAGTATCAAATAATCAAGGTGT 101618 29 100.0 35 ............................. CTTGATTGATCGGGGTCAGTATTGTGACGAACATA 101554 29 100.0 36 ............................. GCTTTTATTTGTTCGTAAGCTGAAAGAACGACTTTT 101489 29 100.0 36 ............................. ATTGATCTTGATTGTCTTAGTATTCGTATCAATAAC 101424 29 100.0 36 ............................. CTGGTACGACTTGCCGGCCTGTGCTGTCACTAATTC 101359 29 100.0 36 ............................. GTCAAATACTCGTTGCCTATTGATTTTAAAGATACT 101294 29 100.0 36 ............................. CAAAATGAATCCTTTTATGAAAAACTCATGTATTCT 101229 29 93.1 36 ..............G.A............ TTGTAATTTCCTCCTTGTGCTGATTTTGCATCAACA 101164 29 93.1 34 ..............G.A............ CCACCTCTGTGACTTCCCGAATAGCTCACTTTGG 101101 29 93.1 35 ..............G.A............ AGGCATCCAATGAAGACTATCACAATCAGCTGATG 101037 29 93.1 36 ..............G.A............ ATTTAATTCTGCTTGCGAGTTTGAAAGTTGTTCCTT 100972 29 96.6 38 ..............G.............. GAAGTTGGAATCTTCCCTATTCTTACAAATCCTTTTTG 100905 28 79.3 0 ..T...........G.A......-.C..C | ========== ====== ====== ====== ============================= ====================================== ================== 56 29 97.7 36 GTCTTAATCTAAAACAGTGGAATGTAAAT # Left flank : AAAGAGTGGAATGTAAATCAGCTCGACGTCTATCAGCCAGCGGCCTTTTTCGA # Right flank : CACCTCCAACATATCTCTCCAAACTTCTTCATCCCCGCCACACCAACAATGCAAAGAAAAATTGCTAGCAATAATCGCCCGATCACTTATACTTTAAGTGTAGGGAGGGAAGAGCCATGATAGGAGATATTCTAAAAGCACGTAGAAAAGAATTGAATTTGACCCAGCAGCAAGTGGCCGACAAACTTCACATTTCTCGGCAGACTATTTCCAACTGGGAAAACGAGAAAAGCTTCCCTGACATTTTTATGTTGATTGAGCTGAGTCTTCTTTTTGACCTGTCACTGGATTATATGATCAAAGGAGATGAGAAGCTTATGAAGAAAATCAAAGACGATGCTACCTTGAATCCACTGATTCAGCAAGCAATATTTCTATTTATTGTTTGCCTAGCCGCTTCCGCATGGGCGGTTTTGTCTTTGCCGCGCACAGGGTTAGTAATTGAAAACGGCTTAACAGTTTTATCAGTTGATGTCTTGTTGCAACTGACGATGATTATT # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCTAAAACAGTGGAATGTAAAT # Alternate repeat : GTCTTAATCTAAAAGAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 313109-313699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREM010000018.1 Enterococcus sp. 669A scaffold1.18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ===================================================================================================================== ================== 313109 41 71.4 117 A.......G....CT-....T.AC..C..G....A...A... AACAATATGGCTTACATGTTTATGGATTGCCATAAGCTAAAGAGCATAACATTTTCAAAAGATTTCAAAACTGAGAATGTTCAAGATATGTCTTCTATGTTCTACAATTGCAGCAAC A [313119] 313268 42 97.6 36 ..............T........................... CGAAATATGGATGCTATGTTCTCCTATTGCAGCAAC 313346 42 92.9 36 ....A......................G.G............ CAAAGTATGTTCGCTATGTTTCAAAACTGTACCAGT 313424 42 100.0 36 .......................................... CAAAGTATGTTCGCTATGTTTCAAAACTGTACCAGT 313502 42 100.0 36 .......................................... CAAGATATGATGTCTATGTTTAACGGATGCAGCAAC 313580 42 100.0 36 .......................................... GAAATTATGTTATCTATGTTTGAAGCCTGCAGCAGT 313658 42 88.1 0 ....................C.A....G.....A....G... | ========== ====== ====== ====== ========================================== ===================================================================================================================== ================== 7 42 92.9 50 TTAACAGAATTGAACCTGTCAAGTTTTAACACAGCAAATGTT # Left flank : TGGCAACCGATCCTCAGTATACTGAATCAACCCCAGGGCGAATCTTCGATGGCTGGATAAACAAAGCAGACAATACCCGCTTTGATTTTGCTACTACAGTGATCGAAAAACCGATCGAGTTGCAAGCGAAATGGTTATATGAAGACAGCGACTGGATTTACGAAAAAATGGATACAGGCATATCCAAAATTATAAGATACAAAGGTACCAATAAAGCCGACATCACCGTTCCATCAGAATTAGGCGGCCTACCAGTAGAGATCGACTTGAAAGCAGTGCTGGGGGATATACTTGGTAAGACTGTAGTGAATTTTGAAATTCAGCCAGCAACCATCACAGGCAAACCGGTAAAGTTAACCGGGACGTTTAATGGGTTGTTTGAGAATCGTCAACCGGATGGAGGTGTTATAGCAAACACTACACTTCAATCAGTAACATTCAATGACGCAGATGCTAGTCAGATAGAAAACATGAGTAAAATGTTTTATGTTTGTGCAGCA # Right flank : TAGAATGGGTGGTATGTTTTATGAGTGCAACAAACTGACCACCCTAAATCTCTCATCGAAGTTCGAGTTTAAATGGGACCACTATCTTCGTGACTTACCAGCTGCAGAAGACAGTGGAAAAACTAACTACTACTGGGTGAAGGATGGAAATCTGGCTGAGGCAACGAATAATCCTGATGCCTATGCCAATACTGGTAAGTTCGCTGAGGAACACAATAAATTGAATGAGAATCCTCAAAAAACGGCTCATGAATACAAGATTGAGAAAGCCCATAAGGTTACATTCGACATCGCTGGAGGCATCGATGCGCCTGAGACATTAAAAGTATTTCACAATCAAAAAGCCCAAATACCTGATTACCAAGGGACGAAAAAATACTATCACTTGGAAGGCTGGAAAAAGGACGGTGTTCTCTTTGATTTCAATCAAGAGATTACAAGTCCGCTGGATTTAATCGCAAGCTGGAAAATCAATCAATACAAAGTTGTGTTTGATAAAA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAACAGAATTGAACCTGTCAAGTTTTAACACAGCAAATGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //