Array 1 3143112-3142043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019413.1 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3143111 29 100.0 32 ............................. ACTAACTGAACCAGTCTGGTTTTAACGACGTC 3143050 29 100.0 32 ............................. CGCGTTTTAGCGTCATTTATTGGCCCCTTGAA 3142989 29 100.0 32 ............................. CGTGCAGCTCTTGGCAGTAAAACAAAATATTC 3142928 29 100.0 32 ............................. GCCCAGGGCGAGCTACGTTACCAGCGCCGCAA 3142867 29 100.0 32 ............................. CGTAAACGGCGCCCAAAAATTGTTATTTGTCG 3142806 29 100.0 34 ............................. AAAATATAAACATCGTTATAAGTCGAAACCTCCC 3142743 29 100.0 32 ............................. CACCTGCTCAAGCGACAACAGGCGATTAATTG 3142682 29 100.0 32 ............................. AAAACGGCTCCGTTATAGATATTCATGGTTAC 3142621 29 100.0 32 ............................. GAGTTACGCCAGGTTGAGTTATTCCGCTGGGC 3142560 29 96.6 32 ............................T TGTGGAGAACCAGAATCAATGAATGAATCTGC 3142499 29 100.0 32 ............................. CCTGAGCGCCACTAGCCGGGTCACGCACTGAT 3142438 29 100.0 32 ............................. CCGTTGCCTAAATTATTCAGCCTGGACATGAG 3142377 29 100.0 32 ............................. TGGATCGGATCATCGGTAACACCTGGCAAGCC 3142316 29 100.0 32 ............................. GTGTGGCACTACATGCCGGACAGAAGACGTGG 3142255 29 100.0 32 ............................. GGTTCAGGCCGTACGCGTATCAAGCTCAGTGG 3142194 29 100.0 32 ............................. AGCTATAACGAATTACAGATTCATCTTTTTCC 3142133 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3142072 29 93.1 0 A...........T................ | A [3142045] ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3161896-3159245 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019413.1 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3161895 29 100.0 32 ............................. TAGCCTGTGCTATATCGTCATTATAATAGAGT 3161834 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 3161773 29 100.0 32 ............................. GCTTTTAACATTTATCTTTCCCCTTGATTGCG 3161712 29 100.0 32 ............................. AATCTAAACAGTAATTTAAAATTGTTAGCGTC 3161651 29 100.0 32 ............................. GGGTATCGCGTCTGTTTTGAGTGCTGTGTTGC 3161590 29 100.0 32 ............................. ATGATGGGGTGCTTAACCCGCGAACGGTCAAA 3161529 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 3161468 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCTGCGGAACA 3161407 29 100.0 32 ............................. GTGATTTCCGGCTCATCGGAACAGATATACAG 3161346 29 100.0 32 ............................. GCCTCTACCACGGAGCAAAAATGATAAGCGCA 3161285 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 3161224 29 100.0 32 ............................. GGATGCAGACAAATGGATGTCTACGTCGAATA 3161163 29 100.0 32 ............................. GCCGCTGTGCGGGTTCGTCAGATGCTGGCGGA 3161102 29 100.0 32 ............................. GCGTATGAAATCGACTACGGCGGGCGCAAACA 3161041 29 100.0 32 ............................. TGAGATCGGCAATTGCTCTCTGGAGTTGCCAT 3160980 29 100.0 32 ............................. GCCAGACAACAGCAGACACCTACGCAACTGCA 3160919 29 100.0 32 ............................. CAGGTTTATTTTCCGCGCGGGCAGGCGCTGGA 3160858 29 100.0 32 ............................. TTATCAGCACATAACGGAGAGCGAGGCGCAGT 3160797 29 100.0 32 ............................. GCGGCCGCGCTGCTGGCACTGGCTGGGTGTAC 3160736 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 3160675 29 100.0 32 ............................. GGGTGCGCACTACTGAATACAAAATTAAAAAG 3160614 29 100.0 32 ............................. TTTTTAGGCTACAACGAGCGCGAATTTTTAAG 3160553 29 100.0 32 ............................. CGATTTATGTAAAGGGTGGCCTGGAAGGGGAT 3160492 29 100.0 32 ............................. ATTATTGATGGTCATCATCGTTTCCTGGGGGC 3160431 29 100.0 32 ............................. AACGCTGTCAAATTATTTTCCCGCCAGCTTGC 3160370 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 3160309 29 100.0 32 ............................. TGCCAGCTCATCAGCGCTCATAACGGGCTCCA 3160248 29 96.6 32 ............................T AACTCCATCAAATCACCAGCATCAAAACAGGC 3160187 29 100.0 32 ............................. GCATGACTGTATGGCGTACAAACTGGATAGAT 3160126 29 96.6 32 ............................T GCCGATTCAATAAAAACAGATAATCTGGCCGC 3160065 29 100.0 32 ............................. GCTGTTATCGCCAGTATGGGCGGCCTGTGGTT 3160004 29 100.0 32 ............................. AGGATCTGTCCCAGCAGGGCGTCTGCACGTTT 3159943 29 100.0 32 ............................. GTCACTTGGGGCAACTTCAAGAATACTTCTGT 3159882 29 100.0 32 ............................. CGCAGGTATCACCTCCGCCATGGGGATCGCGC 3159821 29 100.0 32 ............................. GCCTCTACCACGGAGCAAAAATGATAAGCGCA 3159760 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 3159699 29 100.0 32 ............................. CCGTAGCTTGGTTGTGGACTCATCCTAACGGG 3159638 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 3159577 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 3159516 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 3159455 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 3159394 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 3159333 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 3159272 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //