Array 1 220389-219281 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOVA01000007.1 Edaphovirga cremea strain DSM 105170 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 220388 28 100.0 32 ............................ CAGCTCGCCGCTGAATTCTGGCAGCTTATTAA 220328 28 100.0 32 ............................ CAGTCGGTGTGATTATCGGTGCTGCTTTCGGG 220268 28 100.0 32 ............................ TTTACTGCGGACTTGCATCAACAGCCGATCGA 220208 28 100.0 32 ............................ GATAGGGTATTAAACTATTTAGGCGCAATGGG 220148 28 100.0 32 ............................ AATTTGTTGAGCGATAAAATGAACGGATTTGA 220088 28 100.0 32 ............................ TCGGCTGGCCTCGATGGCCGTCAATGAAACCC 220028 28 100.0 32 ............................ AGGAGGAGCCAATACAAGCCAAAGCGATAAGC 219968 28 100.0 32 ............................ GGCGGGCACACCAAACGGCGTATTTCCGCCAA 219908 28 100.0 32 ............................ GCAAGGGTATGAGCTGCTCGCAACTTGTCCCA 219848 28 100.0 32 ............................ GATTGATGTTGGCACTTCAGTTGGGTTTTTTG 219788 28 96.4 32 ...T........................ AACAGCACTATCGACAATCAATCCGTCGTCAT 219728 28 92.9 32 ...........T.......A........ TCACCGTTTAAGGGGGAGCCGCTTTCCGCTTA 219668 28 100.0 32 ............................ AGCATGAAACCCTGCTGGGCATTACTGATTCA 219608 28 100.0 32 ............................ GGCTACGCCAGCCGACCAGCCGTCTGCCATTT 219548 28 100.0 32 ............................ AAGAAACGCCACCGACCACAACTAGCAAAACA 219488 28 100.0 32 ............................ CTGAAATTATCGACTTTATTGTGCGCCAGCTT 219428 28 100.0 32 ............................ TACGGTACGTTGGGAGCAGCGGGTGAGTTGCG 219368 28 96.4 32 ....................T....... GAACATAGTGAATGCCTCATGATCGAATACGT 219308 28 92.9 0 ......................C.C... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Left flank : AAGAGGATCTGTCCCACCTGATGGATCAAAACTGGCTGCAAGGTTTACGCGATTATACGCGCTGTGGGGCATTGCAGCCGATTCCGCCACAGGTTAAGTACAGAACGGTAAAACGCGTTCAGGCAAAAAGCGCGCATAACAAAAGACGGCGTTCGATTCTCAAAGGATGGCTGACCGAGCAGCAGGCTCTGGAGCAGATACCTGATACCCAACAGAAATCGTTGGATATGCCATTTATTCAGATGGGCAGTCTGTCTAACGGCAATACGATGCGTATCTACATTCAGCACGGCGATATTCTGCCGCAACCGCAGGCGGGAATATTCTCCGCATACGGCCTAAGCAGCACCGCCACGATCCCGTGGTTCTGACCCTTTTTTCCGACCCTTCGCTAACTGATTGTTTTATAAGACCGCATTCAGTTAGCGATAAAAAAGGGTTTTTGGACGAAAAGACCGGTTTATCTTTGTTGGTTAAGGAGTTAATAGAGTTTCGGTACA # Right flank : TAGCGCCCCGTCATAGGGCGTCGGGGATCAGGCAGCCCATAAAATTGTCGCATTAAGGGGGAAATGGAGGAAATAAAACTTGCACCTGTAGCGTTCGCAACGCGAACGCATTTCTGGCGTAATGAAAGGCATTCAACAATTATTAGGCGAGACTTTCCAGGAGATCTTTTTTACTGGAAAAAAGACGTGGCATCTCTTTTTTTGCGTAGACCCTGTCGACCAGCCCGCTATCATTAATGTCTACCTGAAACTCAATCTCATGGATTTTATCCAGAAATAAGATCGAATTATTGAAACCGTAGTCGTTGAAAATAAGCGTTTTGAATTTTTTCAGGAAAGTTGTCAGATCGGTGGAAATTGATGCACATTCTCCCCTCGGTGGAATTGACTTATTAAGAATTTTCGCTGTATGCCCTTGTTTGTAATCGCTAATAACCAAATCAAGCGTTACTCTGCCACTATATATTTCATAACCCAAACCTTTAACCAGATATGTTCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 88784-84607 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOVA01000005.1 Edaphovirga cremea strain DSM 105170 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88783 29 100.0 32 ............................. TCTACCTCCGTATTATTTTAATTTACCAGGGA 88722 29 100.0 32 ............................. TCTGGTACAATAAGGCGCCGACAAATAGAGGT 88661 29 100.0 32 ............................. CGTCGATGGTGGGCAATTATGATGTAAGGCAA 88600 29 100.0 32 ............................. CGAATACGAAACCCCGCTTTTACTTGCTAACC 88539 29 100.0 32 ............................. CCACCACCGAAATCGCCTTCATCCATGAATGA 88478 29 100.0 32 ............................. GGCATACGCTACGCTGCCAGCCTGGGACTCAA 88417 29 100.0 32 ............................. GAGGTTGCGCAGGATAATCCCTATGCCTCCGA 88356 29 100.0 32 ............................. ATCATTGGCTAGCACAATGCTTAATAGTGTAG 88295 29 100.0 33 ............................. ATGATATGAAAGATTATCTTCCCGGCGCTAAGG 88233 29 100.0 32 ............................. ATAACGGCATTGTTGAAAGTGAAATAAAACGC 88172 29 100.0 32 ............................. ATTGGGGAATGAACAGAAAAAATCACCGCGAT 88111 29 100.0 32 ............................. ATTATCTTCCCGGCGCTAAGGGGGCTAAATAA 88050 29 100.0 32 ............................. CATGTTTTGCTGATTGGCGAATGCAGAAATAT 87989 29 100.0 32 ............................. GCATTACTAGAATATATGGCGCTCCTGTATAT 87928 29 100.0 32 ............................. GTAAATCCTACAATTTAGTGGCGACAAATATT 87867 29 100.0 32 ............................. CTAATTATAATGATGAATGCGTTAAAAATAGC 87806 29 100.0 32 ............................. TTTATAATATTGCTCGTCATGCTCAGGCTTAT 87745 29 100.0 32 ............................. CCGAGGCAGTATCAAAACTTGGTAAAGACGCA 87684 29 100.0 32 ............................. GCGACATCACCCGCCTGAAAGAAAGCTACATC 87623 29 100.0 32 ............................. GCCGTGACGGCTTTGATAGCGATGCTCTACGT 87562 29 100.0 32 ............................. GTGACGATTCAGGCAGTGGCAGTTCTACCGTA 87501 29 100.0 32 ............................. CCTACTGGTGACAAGGCTCTCAAGCGGCAGGT 87440 29 100.0 32 ............................. TTCGTCTACCTCGTTGAATTGATGACTGCGCA 87379 29 100.0 32 ............................. ATTACTAAATACGCCACTCATATTGTCGAGCA 87318 29 100.0 32 ............................. CCGGGTCTAGTATCCGGCTTTTTATCGTCATT 87257 29 100.0 32 ............................. GTCAGTCGCAAAGAATCTGGTCGCCGTAGTAA 87196 29 100.0 32 ............................. TGGAATCTCCAGGGATGCTAACTCCTGCAGGG 87135 29 100.0 32 ............................. GGCCGGAGAGGGTAAAAAAAGTCTTTGGGGAA 87074 29 100.0 32 ............................. CATTATTTGACAAGCCAAACGCCGAACGGTCC 87013 29 100.0 32 ............................. TCTGCGCAATCCTTGTCTCGCCATCATATGGC 86952 29 100.0 32 ............................. CACAACAATGGGACTTGCTGCGGCAATAAATG 86891 29 100.0 32 ............................. AGCTATAGATTGCGTTGGTAGAGGATACTGGA 86830 29 100.0 32 ............................. TTTTAGCTCGGGGGATGGGCATTCATCCCACC 86769 29 100.0 32 ............................. CACGCAGAAACGATTCACAGTCTAATATCAAA 86708 29 100.0 32 ............................. ACGCCATTTATTTCCTGCCTGTCGTGCTGACG 86647 29 100.0 32 ............................. AAATAATGTAAATGATGATTTTGATTATTTTT 86586 29 100.0 32 ............................. TTTTCCCTGCGGATCTCTGCAATGCTTTTCAT 86525 29 100.0 32 ............................. AATAATCCAGTCACCAGGCACGGTTCGGCGCA 86464 29 100.0 32 ............................. AGCGTCGCCTTTGTTTATCAGGGCTGACGCCA 86403 29 100.0 32 ............................. CAATTGGCTTAATCACTCTCGCCATACTTGGA 86342 29 100.0 32 ............................. CTGGATTCCCTGCGTCCGGTTCAAATGAGACA 86281 29 100.0 32 ............................. GAATTCGTAATCACCGCAGCACTAAGAAAATC 86220 29 100.0 32 ............................. CTACGGCGGCATAGTAGCCATCACCAAGTGAA 86159 29 100.0 32 ............................. GGAAATGAGCGAAACAACAATTATCGCAGTTT 86098 29 100.0 32 ............................. TGCATCATACCCGCCATCGTTCAATAATTTAA 86037 29 100.0 32 ............................. TAAAGATTTTAATTTCTGGCGAATGCGGTTTT 85976 29 100.0 32 ............................. CGTTTGGTGATGTCCCTAAATTCATTCTTAAA 85915 29 96.6 32 ............T................ CTGAGCACGCCCGTAAAGTTACCTCCGCGTTA 85854 29 100.0 32 ............................. CCTATTAATCTGAGTTAACGCCCACTGCAAAG 85793 29 100.0 32 ............................. TTTTGATGCCGTCTGTCCATACATTTTCATGG 85732 29 100.0 32 ............................. TCCACTGCTTGAGCGGAGTTGACACGTCTGCC 85671 29 100.0 32 ............................. GCGAGCAACAACCTCTTTTCCCTTCTCTGTTG 85610 29 100.0 32 ............................. CTGTCTTTCGACATGACCTCACTCAGTTGTCA 85549 29 100.0 32 ............................. AGATAAAATAAATCCATATATTTACTTATGGA 85488 29 100.0 32 ............................. GCGGCAGCAGAAAACGCGCGTCGCGTTAAGCA 85427 29 100.0 32 ............................. AGTTTTAAGCGCTGATTTTACGCATTGCGCCG 85366 29 100.0 32 ............................. TGTAAAGTCAAACACGCGTGCATTATCCGCCT 85305 29 100.0 30 ............................. AGACAAAAATTGTGATTGCTTCGTTGGGGG 85246 29 96.6 32 .G........................... GGATGCCAATATTTCTTTACGAGGTCATCTAC 85185 29 100.0 32 ............................. CCTACCTTTACTATCCGGTAAAATATCAAATA 85124 29 96.6 33 ............G................ ATGACGTCAAAATGTTAACCGCCATTTTACCGC 85062 29 96.6 32 ............G................ CCACAATTCATCTCCAACAGTAAACATCCTGT 85001 29 96.6 32 ............G................ CCAGCGTTGCGGCTGGGATGATGCACAAACTT 84940 29 96.6 32 ............G................ TGAATTGGTTGAGTTTGACGGCGATATGTATG 84879 29 96.6 32 ............G................ CATCAACCCCCGCTTTGATGATGACAGGGACA 84818 29 100.0 32 ............................. AACCGCAAACGCTTCACGTCGTCACTCGATAA 84757 29 100.0 32 ............................. ACAATATTCTTGCATTGCCGTTACATGTGGGG 84696 29 100.0 32 ............................. TACATCGTCACGAGTCCCGACTTTGTGAAAAT 84635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATAGAAGAAGTACTGGCGGCAGGGGAGATAGAACCCCCGCTTCCACCAGAAGACGCTCAGCCACCGGCTATTCCTGAACCTGTTTCGTTAGCGGATGCCGGACACCGGAGTCAAGGCTGATGAGTTTGTTGATGGTGGTGACCGAAAATGTTCCTCCACGTTTACGAGGTCGCCTGGCGGTGTGGCTGCTTGAGATTCGGGCGGGTGTTTATGTTGGCGATATGTCCCGCCGAGTTCGAGAGATGATTTGGCATCAGGTAACGGAATTAGCCGAAGAAGGGAATGTCGTCATGGTATGGGCGACGAATACTGAGTCAGGATTCGAATTTCAAACCTGGGGAGAAAATCGCCGCATGCCGGTGGATCTCGATGGATTGCGATTAGTGTCATTTCACCCCATTGAAGATCAATGAGTTAAGGTTCTTTAACATCGCTGGAAATTTGGTGGAATTTTTGTATAGGATAAATTTTATTTAAATCAATGGTATACTTTTAGA # Right flank : AATGTTTTGTTTTATTCAAGTACAAGTCAGTCCTGAGGAGGTAATTCACCGGACTAGGGTTGCGTAATATAGCGAAGGGTGGCGGTCACGGCCATTTGTCGGTTTCGGGCAATACTGGTTTCTTCTGATTGCTCCGAGTTGAACAGGGCATCAAACGTATATCGGCTGGAAACCTGATGCACGCAGATACTGCTGATTAACCGATGAACGTCCACAGCACTCAGATCGGGGTAGAAATCGCCGCTGGTTTTGCCTCTTGCCAGAATATCTTCCAATACCCGCAATGCCATGCGATTGGTGTTTTTAATTTCGTCAGACTGCTGGATATAGCGCCCGTGCATCAGGTTTTCACTGCATACCAAACGCATAAAATCGGTGTGGGAAAGGTGATAGTCAAAACTCTCTTCAACCAGCGTGATCATCGCCTCGGAAGGCGTCAATGCCGAGAGATCCAGGCCCAGCTCATGCTTGCGGATCTGCTGGTACACCATTTCAAGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //