Array 1 1552-2378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000136.1 Nostoc sp. UCD120 Contig163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1552 37 100.0 35 ..................................... GTTAAACTACCACCCCTTACTTAGTTGAAAATATA 1624 37 100.0 35 ..................................... TTGTTTATCCCTGATTGATGAGTGTAGCTCATCAA 1696 37 100.0 34 ..................................... TACAAATCACGAAACGTAGACATCATCAATAACA 1767 37 100.0 35 ..................................... CGGCAAAAAGGATATCCCCGTTATTAAAAACAAAA 1839 37 97.3 33 ....................................G TCTAAATTTACTACTCATTCTTTTACTTTTCCT 1909 37 100.0 35 ..................................... TTAGATTTATCTGCTGAAAAAGCTGATTTATTAAG 1981 37 100.0 34 ..................................... AGAGGATTTTTTGGTTAGTCATCCCCGTATAAAC 2052 37 100.0 36 ..................................... GAGAAATACATCTTCTTGGAGATTGCGTAATCGTAG 2125 37 100.0 35 ..................................... GTATTAATTCCTGATTGATGCGTGTAGCTCATCAA 2197 37 100.0 36 ..................................... ATTGAGTTATCTAATGACTGCATTGAAAACAATAGA 2270 37 100.0 35 ..................................... GCAGAAAAAACTAGGGTATCCTGCATCTAAATATG 2342 37 86.5 0 ....T......TT..C....................T | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 98.6 35 ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Left flank : AGAAGGTGTGGTGCATTATGGCGTACCTAATATGCCAGGAGCAGTACCTTGGACAGCAACCCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAATTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCGAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCTGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTGTGTAAGGATTAGGCGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGTCACTAGTAAATTTAAACCATCCGCGCACCTTATGGGGACTGGCTTTCAGCGATTTGCCTCTAGCCAAATCACAATTTATTGTGTTATCATTTCAGCATTCGCGCAACTGAACCTTGAAAACCAAATAAGACAAAGCTTTCAGAAGCCAGCCA # Right flank : TAATCGCCTCACTTTATCAATCGGCTATTGCAGATGTTAATGCTGCATTAAGGCAGTGGTAATATCAATTTTTTAAAGCATCACCAAACTACCTTCTGCTTCTTCTTCTAGTTCATAACCATTAGCCAGTTTTTCAATTGCTTGGTCAAGCATTGCCAAACCTTGATCTACCTTTTCAACTAAACTTAGTTGTCCTCGGAGTTCGGCAGCACCGACGAAACCTTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGGACACCGCGATCGCCTTTATATTCCCACAAGGCTTGTAAATGATCTCTCGCACATTCCAAACGCTGAATCGGAGTAGGTGTCGGTAATATTTCCCCAGTTTTCAGGAAGTGATCGATTTCTCCAACCAAAAACGGATAACCCAAAGTCCCACGGGAACACATCACACCATCAGCACCAGTTTGTTCTAAACATTTCACCGCCGCTTCAACGGAAAAAATATCTCCATTCCCAATTACTGGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 663-1068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000629.1 Nostoc sp. UCD120 Contig127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 663 36 100.0 37 .................................... TGCCTTTTTCAATAAATTCAGGTTCATATAATTTATT 736 36 100.0 34 .................................... CCTACCCTCAAATAACCAACCAAACAATCCTTTA 806 36 100.0 41 .................................... TCGCAAAGCCTAACACCCTTTGCACCATAATTTTTGTACAT 883 36 100.0 38 .................................... GTCTCAACGTGTACACGCTCGTCGTCGTTAATCCAACT 957 36 100.0 40 .................................... GTATTTTATGATTCCTAACGTCCTCTATAAGGACATTTAA 1033 36 91.7 0 ............C......T...............G | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 98.6 38 GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Left flank : CGATGCTGTAGTATTTGCGATCGCAGTTCCACGTTCACGTCATCAAGAGTTTAAGCATGAAAAGGTTGAGCCAATTGCCGGAATTCGGTTCATTCTCCAGCAGGGTCAACTAATACCATTTCACAAAAAGTATGATACGGATAGTCAAGGAATAAATGAAAGAGCAAAATGAACTCATCAATAAAACCCTTATGGTACAGTAATTACGAATTATGAATTACGCGCTGTGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGCCCTTCCCTGACAAAAATCCATGCTTCCCAATAAAACGGATGCTGAAGCGGTGTGTCGAGGTTCAGGGAAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGAGTAAGGGTTTGGGGTATGTTGGTGATTGGTGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAAGG # Right flank : GAATCAAGTTCCATCGCCTATTTGACCGTAAGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCTAATTTTCGAGCCTCAAACCCCTACTGCGATTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGCAAGACCTGAAAAGCTGATGCAAGTGATGTTTAAAGCATTTTTGTTCAAAAGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTGGATCAGGTTCACGAAAATGAGCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAGTTGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACATAGAAATCATCCCGCCATAAGTCCCTAGCATCGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACCATCCCAAGCCCTGCTATTTTAGGCTTTGTGATTAGGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACAAGCTATATACCAATAATCACTTACACCCTGATT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1354-2121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000629.1 Nostoc sp. UCD120 Contig127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1354 37 94.6 33 .....A...............A............... ATAGAAATCATCCCGCCATAAGTCCCTAGCATC 1424 37 94.6 36 .....A...............A............... CATCCCAAGCCCTGCTATTTTAGGCTTTGTGATTAG 1497 37 94.6 34 .....A...............A............... AAGCTATATACCAATAATCACTTACACCCTGATT 1568 37 94.6 40 .....A...............A............... TCTTTTTGCTTGTAACCCCATGCCACGAATGAAGCCCAAG 1645 37 100.0 33 ..................................... TCTGAGAGTCTATCAGTTCGTCTGTCATTACTT 1715 37 100.0 38 ..................................... TTGAATAAACTCAATTTTGCTCATGAATCCAGCCTCAA 1790 37 100.0 35 ..................................... CAAGCAATTAACCCCAGAAGAAGCAGAAATTACGC 1862 37 100.0 37 ..................................... GCGTTGACTCCCAACACTCCCACCCATGATGCATCTG 1936 37 100.0 39 ..................................... ACCTCAATAAAACCTCTTTCTGCTTGCTCTGTGAAATCA 2012 37 97.3 36 ................................A.... GCAGATGGGTAGGCGATACAAGCTAGTGAACATACA 2085 37 94.6 0 ...............................T....A | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 97.3 36 GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Left flank : ACACCCTTTGCACCATAATTTTTGTACATGTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAACGTCTCAACGTGTACACGCTCGTCGTCGTTAATCCAACTGTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAACGTATTTTATGATTCCTAACGTCCTCTATAAGGACATTTAAGTCGCTTCTCTTCGGAGAATTGGAATTAATGGAAAGAATCAAGTTCCATCGCCTATTTGACCGTAAGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCTAATTTTCGAGCCTCAAACCCCTACTGCGATTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGCAAGACCTGAAAAGCTGATGCAAGTGATGTTTAAAGCATTTTTGTTCAAAAGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTGGATCAGGTTCACGAAAATGAGCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAGTT # Right flank : AGAATCAGAAATTTGGTGGCGCGATGGGAAATAGATTTAGTTCACGCCATCTTTATTCCAATTAATCAAAAAAATAAGCTAAATAATTAAATTAAAACCCATCTTCACCTACTCCGATTTATTCCTCTTTTTGAACCAGCAATTTCCCAGACACCCCAGCTGTAAAACCCAACCCAATCGCCGCTACAGTAACGCTGGGCTTAATAAATAACGTCGCAATTCCGATAACTGCGCCCCAAAGACAGCCATAACAGCAAACTATAATCAACTGATTTTTGGGTTTAGCCCTTTCGTCTGATATAGATTGATGGACTATGGCATAATCTTCGAGTTCACCAACGATTTCTGATAAAGAAGCGCCGTACTCTTTTTCCAATCTACAAATGGCCAGTCTGTCTGCTTTAACTGGACTTATGGCTAATTTTTGTAATGTTGTGGTTAATTTATCGCTCATTTTTAAACTTCCCGATGCTTCCACATTCTGGAAAATGTTTAGAAAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : GTCTCAACTAACTATGTGGAGACGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 24713-24544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000667.1 Nostoc sp. UCD120 Contig184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================ ================== 24712 27 100.0 44 ........................... GGATTGAAACACGCCATCGCACTACTGCGATAAGCAACGCAACG 24641 27 100.0 44 ........................... GGATTGAAACACAGGTAGATAAAGCAATGATAAAACAATACTGG 24570 27 96.3 0 ........................T.. | ========== ====== ====== ====== =========================== ============================================ ================== 3 27 98.8 44 ATTGCAATTTATCAAAATCCCTATCAG # Left flank : TCTTTCATCATCTCTACCCTAAATTGGCGAAAACTTTATTGTTGGTTATCAGTACAGTAGTACGACAACAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAAAGTTTTTTCTGTGTGGCTCTTGTCAGAGAAAAGCCGCCTGTATTGGCGAAGAAAAGCCACGGGATAAGCAATTTTCTGTACTGAGTTACTCTTTCTAGCTGGGTTCTCATATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTAAAGTCCTCAAAAAGTGCTTCTATTCCAAATACAGCAAGGCTTTCAACCCATTAGTCAGCTAATCCTAATCCGCGCAATCTCTGAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCTCTCGAATCGCGCAACTGTACCTTGAAAAGTAAATACAGCTTGGGTTTCAGGCTCCCGCTATT # Right flank : AGGTTGTTTGAAAAGTGGTTGACTGTGGTTTTAGGCACTAACTGATCCCCCCTAGCCCCCCTTTTTAAGGGGGGAACCGAAATCAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATGTTTTGTTACCGAGAAGAAAACTTTTCAAACATCCTCTTAGTAAAAGCTAGAAGTTGTGTAGGTTGGGTTGAGCAATAGCTCAACCCAACCTACTATTTTTCTTAACTGAATGATATTGATTTATAGTGCGATCGCTAATCTTTTCGATTGAGTGGGTGCTAGAAAGCATCGATTTGCAAAAGTCAATTTTCTAAAAATAAAAACACAGATGAACACTGATAATTTCTCTGTATCCATCTGTGATTATGTGGTGTCAATACCTGGGAATTAAACCATTAGACTTGTTGTATTTCTGGACGACCATCTTCAACCACAAATGAAGCCCGCTTACTAATCGTGCCAAATGGGGTTGTGACATTTGACATAACCAAATA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 77-770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000047.1 Nostoc sp. UCD120 Contig320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 77 36 100.0 39 .................................... TTTTCTGTTTCGTTGGGTTCGGCAATAAATTGCGAAACC 152 36 100.0 34 .................................... TTGAGCAATAATCCATTCACACTGCTCGCGAGTT 222 36 100.0 38 .................................... ACCATTGCGGCAAACTGCTGTACCGGCATATCGTGAAT 296 36 100.0 38 .................................... ATCACAGGGATAAGCTATGTTTGACTGCAAAGGGTTAT 370 36 100.0 38 .................................... TCTGGAGGTATGAATTGCTTTGTCCATCGTTGCCTTGG 444 36 100.0 38 .................................... TTTCATTGTCTGCATGTGCAAGCAAAGCGAGAAGACTA 518 36 100.0 32 .................................... GCTTTAGAGAGGTTTTTTTGCTCTTCTTGTTC 586 36 100.0 40 .................................... GAAAGACCATCCAAAATAACCGACCATTACTACTGCAACA 662 36 100.0 37 .................................... AACTTTGGTATCCCGAGTTGAAGCACAGTCACAAGAA 735 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 99.7 37 CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Left flank : ACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGTGGCTGAAAGCCTTACGGGGCAAAGCCTCCTAGACGAACTC # Right flank : ACAATCCGATTACTTACCCTTCTCTATTTCAGAAGCAAAACTAATTAAACCTTAATTAATACCGTCGTCATTCGCTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 9492-9082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000741.1 Nostoc sp. UCD120 Contig301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 9491 36 100.0 42 .................................... AAATTCCTTTGTTTTTGCGGTCTGTTCTCTTCCGATACAAAT 9413 36 100.0 36 .................................... ACGTGAAAAAAGTAATCTAAGTATGTTCCATGTACA 9341 36 100.0 40 .................................... GAGCGCCAGATCGCATCGCCTTGCAATGCTAACTGGAATG 9265 36 100.0 33 .................................... GTCAGCGATCGCTACGAACTTTACCCCACTCAA 9196 36 97.2 44 ............C....................... AATTCGATCTGTTGTAGTGTAAACGGTACAAATATCACATCTAA 9116 35 83.3 0 ............C..............T-.CT...T | ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 96.8 39 GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Left flank : GAAACAATATCTGGAGTGGCAGTGCGTCTCGGTATAATTCTTTTTATGAACGTGGCTCTAGACCCTGAAACTTTAGTTTCAATTGATACTCCTAACCTCCTGCCTTCTGCCTCGTGCCCTCTGCCTTTTTGTAAGGAAAACTTGGTATAGCATGGCGGAAATCAACCACCCATTCCAAATCAATAAAACCCTTACGGTAGAGTAATTACGAATTATGAATTACGCCCTGCGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAAGGGATGCTGAAACGGTGTGCCGAGGTTCAGGGAAAATAGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGGGTAAGGGTTTGTGGTATGTTGGTGATTGGTGAAATGGCAGATTGGCGATTAATTTTTGTGGCCTTCGGAAACGGCTTCTGGATTCCTTACTGGATAAGGGTCTAAAATTGAGGG # Right flank : AAAAAGGTCGGGATATTTACATCTCGACCTTTACAAGTATTTTTAAATAAATATATTTTTTATTTTTCACTGCTCATAAACTTTAAGAATCGCCTCACCAATTCCCTTAACCTTAGCTACCAATTCCTCTGGTTGTACTACTTTCACGTTGCCGCCAAAACCAACAATCCACCGTAAAAATTCCACGTCACCCAAATACCATATAGGCAATACCGCCTGAAAACGATTGGGAAACTGCTTATCTGTGGTTTTCTTCAGGCAGAAAATCGACTTAGGTAACATTAATTTGCCACCCTCTACAGGTGGAGACATCTTCATTTGTTTTGCAGGAAATCTCTTAGTTCCTTCCGTAATAAACCGGAAGATAAAATCATTAAACCACAGTTCTACTGTAATACAAACTTGGGAACGTTCTTGCTTATCGTTAGACAGAAACTTGCGCTGGTCATTTGCACTATACCCCAAAAAAATCCCGGCGCTAGCAGCAGAAAGTTTCTGTA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 10181-10360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000741.1 Nostoc sp. UCD120 Contig301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 10181 35 100.0 37 ................................... ACTATAACGTTGAGAATGGAACGTGGGCCGTTATCAG 10253 35 100.0 38 ................................... TTCTATTTCTACTACACTCATTTCAGTGTAGTACAGAG 10326 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 3 35 100.0 38 CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : AGCATCCCTTTTATTGGGGAGCATGGATTTGTCAGGGAAGGACAGATCCCTTAGTCGGTACAGGAATTTTTAACTAGTACCGCAGGGCGTAATTCATAATTCGTAATTACTCTACCGTAAGGGTTTTATTGATTTGGAATGGGTGGTTGATTTCCGCCATGCTATACCAAGTTTTCCTTACAAAAAGGCAGAGGGCACGAGGCAGAAGGCAGGAGGTTAGGAGTATCAATTGAAACTAAAGTTTCAGGGTCTAGAGCCACGTTCATAAAAAGAATTATACCGAGACGCACTGCCACTCCAGATATTGTTTCGGGGCTGAAGTCCAAAGCTCCAAACCCCTATAATTTCGTTGGCAGCCCCGGCAGCGTTATTAATTAAGAGTTTTAGGCTATTTCTCTGACCCATAATTCTCAATTGAGGCTATTGATTTTGGATTATTTTGACAAGCCCCGAAAATCTGCTGTAGGATTACCTTCAGGTAAGGCTTTCAGAAGCCAGCC # Right flank : CCATAAAACTAGCGAGCGTTCTGCAACGCTGCGATTGCATCTATTTTTTCTTGTGTTGCTAAACGAAGGGATGATTTTATTTATGTAGGTACAATTCGATGCTTAAAATAATGAAGTATCTTAGCATTTTTTCTGTTTTGGAATAGCATAAAGTTTTTCGCTCATTGAAGTGATCGCTTTCATACAACGAGTTAATTGCTGCATTAACAATCAAGTTTACTTTTGCTGTCTCCACGCAAGCTTGTACTCCCTTTCAACAGCCGCCACCAGCTTTGCCTGCAAAGATGACAGATATGGTTTAGCAAAATCCCCAACCCTTGCAACAGCGAATCCACAGAAGAGTCACGGCTGGGCACTTGATGCAACTGCCGTAACTTCACACATAACTACTGCTCCCTTCACTTTCGTGCGATGGCGTAACTGCCCTCTGTTGGCGATCGCCCTTACCTCAAAACAAAAAATCACCCAGTAGTTATATCCGGGAGCAATGCGGTTTTGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 7337-7751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000580.1 Nostoc sp. UCD120 Contig37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 7337 38 100.0 36 ...................................... ATCAAATGCTGACCTGGGTAAAATCGCTTTATTGGC 7411 38 100.0 38 ...................................... TCTAGCAAAATACTCACAAGCAGCAGGACTAGAACCAG 7487 38 100.0 42 ...................................... ATATCTATACAAATTGATCTGATATAGCTAGGGACTGCCAGT 7567 38 97.4 36 A..................................... GTGGTTCTGGTGGTATATCAGGCTGTTCCCCCAGTG 7641 38 100.0 35 ...................................... CGGCGTTCAGCCTACAACAGATTTAATTGAGGAAG 7714 38 94.7 0 A....................................G | ========== ====== ====== ====== ====================================== ========================================== ================== 6 38 98.7 38 GGTTTCCGAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TTTTATTTAATAATTTACGATCTGCCTGATAACAAAGCTGCAAATAAACGTCGTACTCGCCTACATAAAATGTTATCTGGTTACGGAAAATGGACGCAATACAGCGTTTTTGAGTGTTTTTTAACAGCAGTACAATTTGCTACGCTCCAAACCAAGATAGAAAAACTGGTTAAGCCTGAAGAGGATTCGGTTCGATTGTATATACTTGATGCAGGTGCAATTAAACGAACAATTACATACGGGTCTGAAATTCCTCGACAAGAGGAAACAATAGTCTTATGATTATGTAATCAGCTTGATGATTGGCAAGCCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCGTTTCAGTAATCGAGAAAGTTGCAAATTAGTTGCAATAAGCCAGGCTGAAAATGACCTTTTTTTTCGATCTGCCAAAAGCATTCCCAGGAAGCTTGCTCCGTAACAGTTTCAGACCGAGC # Right flank : GATTGAATCATAAAGTCAAAGAGGATGGAAATTGCGTACAATATTGAGCATTATTTTAAAGCCATTAGTAATGCCAAGAGCAGCTACATCTACTAGTCGTAAACCAAAGCCAAAGCAAAAATCTGTTGCTTCTGTTGTGACATGGGCAGATGAAACAGAATTGGTGGGATTAGTGTTTGAACTGGAGTCAAGTGCTTCTGCTTTGCTTTATTCGCAGTACACGATTGGGCTGCACGCATGGCTTCTGGAGCAGGTAAGACAATTCGACCCAGACCTTTCAGCTTATCTTCATGATGGAGAGTCAGAAAAACCCTTTAATATTTCAGCGCTGTCGGGTCAACTAGTTGCTAGTGGCAAACAACTACGATTAGAAGCGAATCAAATTTACTACTGGCACGTGAACGCTTTATCTCAACGGGTAGCACAGTTTCTCAAACACTGGTTAACTCAACTACCAGAAAGGTTAGATTTAAAAGGTGCATCTCTAGAGATAAAACAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCGAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 9938-9234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000580.1 Nostoc sp. UCD120 Contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 9937 37 100.0 42 ..................................... CCCTATCTACTTGTAGAGTTTTCCACAATCTTCCAAATGTCG 9858 37 100.0 35 ..................................... GAAATACTAAAAAGAGCTTTAAACGATGGATTGAT 9786 37 100.0 38 ..................................... CAATGGTGGGCACACAATGTTAGCGCTTCATGATGCGT 9711 37 100.0 36 ..................................... TGTTCAAGCAATCCAGCCTAAAGTTGCACGGAACAT 9638 37 100.0 35 ..................................... TTTAGGCGTTAGCCTCATTCCCTACCCATTAGGAA 9566 37 100.0 35 ..................................... ATTCACTAGCCTTTGCCATTTTAAAGCAGTAATTG 9494 37 100.0 35 ..................................... GGCTATTCTGAACAACCAGCAGAATGCGATCGCAG 9422 37 100.0 43 ..................................... CTTAACCAAGATTTGATCGAAAGTTCATTCAATCAATAAATAT 9342 37 100.0 35 ..................................... CCAGACAACTTTAATGAATGGGAATTTTTACAAGA 9270 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 100.0 37 GTTTCAGTCCCCGTGAGGGGATTTAGTCAATGGAAAC # Left flank : TAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAATCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCAAATATTTTTTTGGCGTGTCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAACTTTGAAACCCTTGTGATGTCTTAATTTCAGAGACTAGTGTGCCAATTGATTTAGTTTTTTGATGCGAGACGAAAGAAGCTTTTTAAGGGATATGCCAAATTTGTATCTGAAAAGCTTTATTTGCAAGGGGTCTAGACGGCAAGGTTTCAACCACCATTCCGGCTAGGGGTGGTGTACATTCGTAATCCACCACAG # Right flank : CGCTCGGTGCTGAAACTGTTACAGAGCAGGCTTCCTGGGAGGCTTTTTGGCAGATCGGAAAAAAAGGTCATTTTCAGCCGTCCTTATTGCAAATTATTTGCAGCTTCCTCAATTATTGAAACGCTGTAATTATTTAATTGTCTAGGTTCTGGCGATTTTGGCAGAACCCCCAGGTTTTTGACCCCGCTTCGATTTGCCAAACATCAATTTGATAACCCAATCATAAAACAATTACTTATCCTTGTCCACAAGCAAAGGTTTTCAACTATTATTTTCTTGTTTTAGGGATTTTCTGGCTAATTTCACGTAAGTTTTCACAGTCGAGATCGGCATCTCTAAATCTTCGGCGATTACCTTCAATGATTCCCCCATCTCCCGCCGCGCCAAAATCGTTGCCCAGGTAACAGCAATTTTATCTGTTCGCTCTCCTCCTGTCCGTTTGCGTTGTGCAGTAAATAATTTTATCAGTTCCTCAATTCGCTCTCCCAGCAGATTTGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTAGTCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3580-4048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000834.1 Nostoc sp. UCD120 Contig466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3580 37 100.0 35 ..................................... TTATGTGTCCCCACTCCACTGGTGGCAAGTTTCGG 3652 37 100.0 34 ..................................... ACCAGAGCGATCGCTGAACATGGACGTACTATTC 3723 37 100.0 35 ..................................... ATAATTTGTCCGCTTGAAAGTACATATCCGTTTAC 3795 37 100.0 37 ..................................... CTATGGTTCCCCAACCGAACTTGGTATCATTTATATG 3869 37 100.0 34 ..................................... CAATTACTGAATGACCCTCCCTAACACATAATTC 3940 37 100.0 35 ..................................... TAATTAACCAAACCCTTGTAAATTAAGGAAAAAAG 4012 37 91.9 0 ....T....A......................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.8 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GACTCAGGCGGATTACAAGTTAAATCCAAGTCAAGTTGGGTTGCTGCGCCTCCCGTTCCCGGTTCTTTTGTCTGTAACATCGGCGATATGCTAGACAAGATGACGGGAGGTTTCTATCGTTCTACACCTCATCGTGTACAAAACCAGTCCCCAAATCATCGCCTTTCCTTCCCCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCCATTGAATTAGATAATATAGTAGGGAATGATAATATAGGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTATGTGTTGAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACTGTATTATAGGTTTTTAAGTCAGTTCTTCTTTGCTGAGTCACCTTTTCGTTAGGTTCCTGTATGTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTACAGGCCCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCACTTCACCAAAAG # Right flank : CTAGCTGTTTCTACTTTTTGCAATATCTTACGTTCTATATTGAAACCCAAAAGTTGCTGGTAATACTGGGGAGAGAAACAAAAATGTATGAGTCAATGGGTTTATAATTGAAAACTGTGAATCAGCAAGAAGTTTGATCTAAGGAATACCTGGCTAAAATCTCCTTCCAAGGGGAGATGCCAAAGGCGAACGGTGACAACTCATAATTGGAGCGAAGCGACTGGTGAGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGTGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAGCATCTAGGCTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACAGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGTGAAGCAGGGTTTCGCCAGATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGCATTGTATTACGGCGAGAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1038-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000928.1 Nostoc sp. UCD120 Contig648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 1037 37 97.3 44 ......................G.............. TTGCTAGAAGAGAATACAACATTCGTCTTCTCCCACGGGATGAA 956 37 100.0 48 ..................................... TCACTGCTTGGATGTCTAGACTAGCCAATTTAGACTTAACTTGATCGA 871 37 100.0 42 ..................................... ACCCTGTGAAACAGGAGCAGGTAAAACCAGCATGATGCTTGG 792 37 100.0 38 ..................................... TTATTTAAAGAAGTAATCTTATCAAGGAAGTAAAGTAT 717 37 100.0 35 ..................................... ATAAGCTACCCAGAAACAGCAGAAGAAATTTTTAA 645 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ================================================ ================== 6 37 99.1 42 GTTTCCATTAATTCCACTTCTCATTGGAGAAGCGACT # Left flank : AAGCATTAGCTTACATACAAGATTGTATTACGTTTCCACTAATTCCACTTCTGATTGGAGAAGCGACTCAATAAGAGCTTCTAATCATTCAAGGGTGTGATTCGTTTCCATTAATTCCACTTCTGATTGGAGAAGCGACCACAAGGAAACTTTAGACGGCCACTTTATCCTTTAAGTTACAGTTTATGAAGCATAAAGCGGCAATAACTGCCATTTTATGTTTCAAGTCACACTAATAAAGCCAAAATATGGTTTTTGTTAAACCTTGTCAGATTGCAGAATGTTTCTATTAATTAGCCTCCACATAATTAGTGGAGACTATTGACACGGGACTAACTGACGGTGATGCTACATAGTTTCCATTAATTCGCCTCCACATAATTAGTGGAGACATGATTTGTGCTTTTCAGTTTGTTGAGCAAGTCGATAAGTTTCCATTAATTCGCCTCCACATAGTTATTGAAAACAGTACCAGCCGACGTTCAGACTGCGGTTGACAA # Right flank : CCTCTTATTTAAACCCTTATGGTGCTTGATGTCCAGATGCCATTTGCGGCGGGGTATAGCTCTACAGCCAAATTCAACCATATTACACAGATATAAAAGCCCTGAAACCCTTAAACAGTAGGACATCGGCGGGGTCTACAAGAGAATAAGCATTACCCGCTTTTGCTGACCCCGCCGCAAGAGCTTCCACTCTAGAAAGCAAAAAGTAGATCCTTGAGCCTAGCAAAGATTATTCAATCACCAAAATACCTACAGAAATTCCAAATAATAGCGATATCGCATTCCAAGTTTCCGGCTATTTCTACACTCTTAATTTTATTTATAGCTTTACCTATTAAATAAGAGAGTCTGCTATTTCTTGAAGTTTTTTATTCAACTTCTCTCTTTTGTAAGGAAGTTTAAAATAGTTGATCGCCTCTAAGAATGGCTGTTTAACATAATTTACATAAGCAGTCATTACATCAGGTGCTTGATACTTTTCGTATCCTAGTAGATAGCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTCATTGGAGAAGCGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2506-4011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZR010000928.1 Nostoc sp. UCD120 Contig648, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 2506 23 87.0 47 T.......A.............A GCTGTGTTTCAGATTGTGGATCAGCAAGTTGTTGTCGCTTCTCTTTG 2576 23 91.3 57 T.....................C CAGCCAAACCGTCAATAGCAGTCTTGACTTGTTCACGTTCAGAGTCGCTTCTCTTTG 2656 23 95.7 55 T...................... CTATCTTGATGTCTTCTAGCAATTCTACAAGATGTGGTGCCGTCGCTTCTCTTCG 2734 23 95.7 47 ......................A CAACGGTTCGCCCATAGAGGTAACGGCTTTTGAGTCGCTTCTCTTCG 2804 23 100.0 55 ....................... CGAAGCAGAGTGGGGCGCAAAATGCGATCGCGTCATCATAAGTCGCTTCTCTTCG 2882 23 95.7 51 ......................G ATACCGGGCCAAAGAAGTCATCGGGCTTTGTATCACTGTCGCTTCTCTTCG 2956 23 95.7 49 ......................C ATCCATCTATGTCTCCTTGAGCTTGCCAATCCCCAGTCGCTTCTCTTTG 3028 23 91.3 57 T.....................A CTTCTCCTTGAGCTTTGCAAGCTTGAATTAGAAGTTCTTTGTTGTCGCTTCTCTTTG 3108 23 95.7 50 T...................... GTTCATAAGCTTCTATGAATGCTTCCATTACTACAAGTCGCTTCTCTTTG 3181 23 91.3 52 T.....................A AGAGGTTATCAATGTCGATGTATGCTGGCAACATTAGGTCTCAACTAACTAT 3256 23 73.9 49 .T.G..ACA.............G ATTATCGTGATTGTTGATATGCATTGTTACTGGTGTCTCAACTAACTAT 3328 23 78.3 48 .T.G..AC.............A. CTTCCCAGGTATGAGTTTATAGAACTTGATAAAGTCTCAACTAACTAT C [3349] 3400 22 69.6 54 .T.GG.AT........-....A. CAAGTGAATCTATTGGGGTTTATCGTGGTTCTAACAATGGTCTCAACTAACGAT 3476 23 82.6 48 .T.G..AC............... CTTGCTCGTCAACCCAACGCGCGATCGCATTCAGATCGCTTCTCCAAT 3547 23 100.0 48 ....................... TACAAGGAATCGAAGATCAGATGGCCGATCCTCAGTAGCTTCTCTTTG 3618 23 95.7 59 T...................... TAGCTAATTTCTGCATATCTTTCCAGATGCAATTGATAACAGTAGGTCGCTTCTCTTCG 3700 23 95.7 51 .....................A. GAACCAACGAAATAGGAGTACGGACTAATATTCTCTTGTCGCTTCTCTTCG 3774 23 100.0 50 ....................... ATGTAGCATCACCGTCAGTTAGTCCCGTGTCAATAGTCTCCACTAACTAT 3847 23 78.3 48 .T.G..GC..............G AATTATTGCCAATTAAATGATTCCCGATCGTATGTATCCACTAACTAT 3918 23 78.3 48 .T.G..GC.............A. ACGTAGCATCACCATCTGTCAGCCCAGTATCCAGTCTCCAGTAACTAT 3989 23 69.6 0 .T.G..GC........T....AG | ========== ====== ====== ====== ======================= =========================================================== ================== 21 23 88.6 51 GAGAAGTGGAATTAATGGAAACT # Left flank : CCTTGCCATGTAATAGCAAGCACGAGTCTCCACTAACTATGTGGAGGCGAATTAATGGAAACCAGCATTGGCGATCGCACTGGTAGCAGATCATCTTACACCGACTAAAGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAACGGATGCTGAAGCGGTGTGCCGAGGTTCAGATACTGTTGGCGAAAGTGTTACAAACGCACGGACAAAAGTGTTACAACTCAAAGCCGCAACTACAGATTGAAGGTTTGAGCTTACGTAATACTTAATAAGACAATAATGTATTACATTCGCCAACAGTATCAGGTTCAGGGAAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGGGTAAGGGTTTGGGGTATGTTGGTGATTGGTGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAAGGGTCGCTTCTCTTTG # Right flank : AATAAGAAATTTGGTGGCGACGGAAGATAGATTTAGTTCACGCCATAT # Questionable array : NO Score: 4.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:-0.34, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAAGTGGAATTAATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [9-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //