Array 1 28738-28050 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVV01000014.1 Pectobacterium versatile strain NY1705A NODE_14_length_103660_cov_13.0501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28737 28 100.0 32 ............................ TATCTAAATCGGATGGTATCGGCAACGCGCCA 28677 28 100.0 32 ............................ TCCCGTTCTCTAACGAGACTCTAGCCGCCGAT 28617 28 100.0 32 ............................ GTCACTAACCAAGGCGGATTAATCACCGCTAA 28557 28 100.0 32 ............................ ACCCAGACGATGGAACAGACGCTGGCACTCAC 28497 28 100.0 33 ............................ CATCAGTTTCCGCTTTCGTCAACTTTCTTCCGA 28436 28 96.4 32 ...........T................ GATGGGTTCACGCCAAAATGCTGCTTAATCAT 28376 28 96.4 32 ...........T................ ATGAACCCTGATAGTTCACAATCTGGGTCGGC 28316 28 96.4 32 ...........T................ GCATCCAGTGATCGCTTATGTTCTTTCTCTCT 28256 28 96.4 32 ...........T................ AGTAAAGCTGTCGCGCGCGCTGCCTGATGAAT 28196 28 100.0 32 ............................ GCTGACTCCGCTCCGGAAAGTCTGGAGCATCA 28136 28 96.4 32 .............C.............. CCGTTCCACCAGCCGCAAGCCAGCCTAGCAGT 28076 27 75.0 0 ...........TGC......-..C..GG | ========== ====== ====== ====== ============================ ================================= ================== 12 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCATCCCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCCAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : CTTATCGGGATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAGTGTGAGACTGTTCGCACTCCGCCACCGTTTCCGGCGTGCCGGAGACCAGAATTTCTCCGCCGCCGCTGCCGCCTTCTGGCCCTAAGTCGACAATCCAGTCCGCCGTTTTAATCACATCCAGATTGTGTTCAATCACCACGATGGTATTGCCCTGATCGCGCAACTGATGCAGAACGGTAAGAAGCTGCTGAATATCGGCAAAGTGCAGGCCGGTTGTCGGTTCGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37311-38121 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVV01000014.1 Pectobacterium versatile strain NY1705A NODE_14_length_103660_cov_13.0501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37311 28 96.4 32 ................A........... TTAGATCGCGCCGCTGGCGTCAGGCCAAATTC 37371 28 96.4 32 ................A........... TGCTACTGGCGCAGGGTATTCAGTCCCCGGAT 37431 28 96.4 33 ................A........... AGTGCTCGGCGAGGTCATCTACGTATGAATCAT 37492 28 96.4 33 ................A........... TCGATCCCAAAAAAGGCAGCGCCACTGCCTACG 37553 28 100.0 32 ............................ TGATACTTATGCCACACGCGCTGATTGAAGTT 37613 28 100.0 32 ............................ AGAATGAAATAATATCGATAGTGCTCGCGACG 37673 28 100.0 32 ............................ AGGCACAATTCTGTTGTTGTTTTTCAGAGATA 37733 28 100.0 33 ............................ CATCTATGCTTTCACCTTCATTTATCTCCGTAT 37794 28 96.4 32 ............G............... ATACCGCAACGCCCAGCAGGATGAGCAACGCA 37854 28 100.0 32 ............................ TTGAACAGATTGCATGGTGCACAGGCTGGGAA 37914 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCCATTATCC 37974 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 38034 28 92.9 32 ........T....C.............. TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 38094 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATCTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGATGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCCGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTATGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCACGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGATTCTTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGACAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 46290-45001 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVV01000014.1 Pectobacterium versatile strain NY1705A NODE_14_length_103660_cov_13.0501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46289 28 100.0 32 ............................ ATACACCAACAAGCCGTTTGTGGGTTTCTATA 46229 28 100.0 32 ............................ GATATCGAGTGAGTTGATATAATCAGCAATCG 46169 28 100.0 32 ............................ ATCCAAACCCGTTCGCATCCGTATCTATCGAT 46109 28 100.0 32 ............................ CAAGGCAATAACAATACCAGCAGTGCTTTCTA 46049 28 100.0 32 ............................ TTACAACTCTGCATATAGCCGCTCGGAATCAT 45989 28 100.0 32 ............................ TCAGCCAGCGGGGAACATAACGCTGAAATGTT 45929 28 100.0 32 ............................ GTTGCATGGCGTAGATGTCACCATTGATATGC 45869 28 100.0 32 ............................ AACTGGCGCACTGGAGAACGTCCCGGATGCAA 45809 28 100.0 32 ............................ CAGTAGAGCAAAAACAATCTGACCCTGTAAGT 45749 28 100.0 32 ............................ CTGAAAGTTCGCCCGACGGTGCTTGTCGTACC 45689 28 100.0 32 ............................ TTCCCAATCCAAATCGCCATTGAGTGGGATAA 45629 28 100.0 32 ............................ AGCAGCGCACCACGGCGTTGAGCAAAGTATTC 45569 28 100.0 32 ............................ AAAACTTGATGGATTGGCTCTGGAGGTCGGAT 45509 28 100.0 32 ............................ TTCCCCAGAACGATGGCAAGAACGATGGCGCT 45449 28 100.0 33 ............................ CGCAGCTGGGGCGCTGGGTTCTGCAAAGTCCTA 45388 28 100.0 32 ............................ TACCAACATCCGGCATGGGCATGAGCAATCGT 45328 28 100.0 32 ............................ TTGAGAGGATGTTAGTTTATGCGTAGAACGCA 45268 28 100.0 32 ............................ TGGTACTTCGCTTTAACCAGATTCCCCTTCAG 45208 28 100.0 32 ............................ TGAGTGTGAGGCTAAGGAATATGAAATGATGT 45148 28 100.0 32 ............................ GTTGTCGCGCAGCCGGTGCGTAATCAAATGGG 45088 28 100.0 32 ............................ ATCGCAGAAAACGTGTTATCTGACATATCGCG 45028 28 85.7 0 ............GC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTATTACCGTTTTTAAAAACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGACCTATTGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //