Array 1 5383-6203 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMU01000158.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 670102-3 isolate CFSAN000359 SEEH1023_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5383 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5444 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5505 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5566 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5627 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5688 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5749 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5810 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5871 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5932 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5993 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6054 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6115 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6176 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22460-24123 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMU01000158.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 670102-3 isolate CFSAN000359 SEEH1023_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 22460 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 22521 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 22582 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 22643 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 22710 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 22771 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 22832 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 22893 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 22954 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23015 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23076 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23137 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23198 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23259 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23320 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 23381 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23442 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23503 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23564 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 23625 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [23667] 23667 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23728 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 23789 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 23850 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23911 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23972 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24033 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24094 29 96.6 0 A............................ | A [24120] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //