Array 1 156418-159476 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGL01000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain N29352 NODE_2_length_392475_cov_3.56787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 156418 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 156479 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 156540 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 156601 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 156662 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 156723 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 156784 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 156845 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 156906 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 156967 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 157028 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 157089 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 157150 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 157211 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 157272 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 157333 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 157394 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 157455 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 157516 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 157577 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 157638 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 157699 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 157802 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 157863 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 157924 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 157985 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 158046 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 158107 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 158168 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 158229 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 158290 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 158351 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 158412 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 158473 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 158534 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 158595 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 158656 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 158717 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 158778 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 158839 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 158900 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 158961 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 159022 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 159083 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 159144 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 159205 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 159266 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 159327 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 159388 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 159449 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176022-178492 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGL01000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain N29352 NODE_2_length_392475_cov_3.56787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176022 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 176083 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 176144 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 176205 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 176266 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 176327 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 176388 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 176449 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 176510 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 176571 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 176632 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 176693 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 176754 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 176815 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 176876 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 176937 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 176998 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 177059 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 177120 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 177181 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 177242 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 177303 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 177364 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 177425 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 177486 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 177547 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 177608 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 177670 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 177731 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 177792 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 177853 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 177914 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 177975 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 178036 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 178097 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 178158 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 178219 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 178280 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 178341 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 178402 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 178463 29 100.0 0 ............................. | A [178490] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //