Array 1 14304-12811 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387205.1 Azohydromonas australica DSM 1124 H537DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14303 29 100.0 32 ............................. CGTCACGTCGTAATAGATCTGTCCTACTTGTT 14242 29 96.6 32 ............................C ACGCCGACAGCGCGCGCCACGAACTCGGCCAC 14181 29 100.0 32 ............................. TCCGCCGCCCACTTGACATAGGCCGCCAGCGC 14120 29 100.0 32 ............................. CTGGTCGCCCGGGTACAGCATGCCGTTCATGA 14059 29 100.0 32 ............................. ATCCAGTGGAAGGGCGCGGCCACCACGCAGGC 13998 28 93.1 32 ...............-.C........... CCTCTGTACGTGCTCGGCCTGCGCATTGAGGG 13938 29 96.6 32 ............................A AGCAGGCATTCAAATGGATGCAACCATGCAGC 13877 29 100.0 32 ............................. GCCGCCGGCGTCACGCTGGGCCTGGGCGAGGC 13816 29 100.0 32 ............................. TGCAAATCCCCTTGTTCGCTTAGCTGGTTAAC 13755 29 100.0 32 ............................. CGTTGGGCGGGGATGCTCGCGCGGCGCTGGCT 13694 29 100.0 32 ............................. CCCAAGGCGCCGAAGCGCACCCCCTGCGAGCA 13633 29 100.0 32 ............................. GGGAAGCGGCGCCGGTACTTCGGCACCGACTC 13572 29 100.0 32 ............................. GCGCCGGACGTTTCATGCACCGGGTAGACAGA 13511 29 100.0 32 ............................. GGGAAGCGGCGCCGGTACTTCGGCACCGACTC 13450 29 100.0 32 ............................. GCGCCGGACGTTTCATGCACCGGGTAGACAGA 13389 29 100.0 32 ............................. GCATTGCCCTGCGGGCCAACGGCGACCTGCTG 13328 29 96.6 32 ............................C GGCTCCAGCACGAGCGATTCCAACGTCACGCA 13267 29 93.1 32 .........A.....A............. TCATCTACTCGATCCGCGCGCGCCGGGGAGAG 13206 29 100.0 32 ............................. ATGTCTTCGCCCTTGAGGGCGGGAATGTCGAT 13145 29 100.0 32 ............................. GTGTCGTACTACAACGACTTCCAGAACGCTGT 13084 29 100.0 32 ............................. CTCCAGCCGGCCGCTGACTGCGCAAAGGCCTT 13023 29 100.0 32 ............................. TTGGGGATGGTGCCCTTGAGCTGGGCCAGCGC 12962 29 93.1 32 ..........T.................C TCGGCGCCAGTGGGTTGTGCTGGTGGTAGCGC 12901 29 100.0 33 ............................. AGCTCGTTCAGCGAACTGCTCAGCAGCATGATC 12839 29 82.8 0 ............TC.......C..C..T. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.1 32 GTATTTCCCGCGCGAGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTTCCCGCGCGAGCGGGGATGAACCGACGGCAGGGACGGCGCTGGTGAGCGCCGCCAT # Right flank : GCGGCTTCTTGATGGATCAGGAGATGGAGTTGGGCTTAAGATTATTTGCGCGCATCGAAAGCCTTTATGTCCCTGCGCTCCAGCAAAATACGTACGGCGCCATACCAGGAAAGCACCGGTAGCAAAACGCCCTTTCCCCGAATGGACGCCCCTTTTATTCCATCCTCGCCCCCGATCAGATTGAAATTGGAGCAGCAAGAAAACCTCATCACCTCCAAGCAGTTGAGGTTTTCTACTCCCAGTCCATTCACCTCCCCTTGAACACCGCCGGCCGCTTCTCCTGCCACGCCCGCACGCCCTCGCGCAGGTCTTGCGAGGCGTTGACGCGGGCGATGTCGCGCGCCAGGGCGTCGGCGTCCAGCGCGCCGCGGGCGATGGCGTCCAGGTGGCGCTTCATGCCCAGCAGCGCCAGCGGCGCCATGCCGGCCAGGCGCTCGCACCACGCCTGCCCGGCCTGCGCCAGCTCTTCGGGCTCGACCATGCGGTCCAGGTAGCCCAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-10] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15685-15246 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387205.1 Azohydromonas australica DSM 1124 H537DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15684 29 100.0 32 ............................. GTCAACGGGGTCGCCGACACCGCCTACACCAC 15623 29 100.0 32 ............................. CGCGTTGGCCACGCGCTCACCGACGTGGTGTG 15562 29 96.6 32 ............................T GCTAAGGACGAACTCGCCTGTCTCCGGGAGGA 15501 29 100.0 15 ............................. GTNNNNNNNNNNGTG Deletion [15458] 15457 29 96.6 32 ............................T GCTAAGGACGAACTCGCCTGTCTCCGGGAGGA 15396 29 100.0 32 ............................. GTGTAGAGGCCGAGCGCTCGGAGATGGCTGCA 15335 29 96.6 32 ..................T.......... CCTGGGCTTCTTCCGTGTTACGTAGCCCGCCC 15274 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 30 GTATTTCCCGCGCGAGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27663-27329 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387205.1 Azohydromonas australica DSM 1124 H537DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27662 29 96.6 32 ............................A TCATCCAAGATCCGGCTAAAGCCTCATCCATC 27601 29 100.0 32 ............................. GTCAATTTCTTGGCCTTGGTGCGCTTGACGAA 27540 29 100.0 32 ............................. GCAGCGGATCAGGTGGAGCAGGGCGAGCCCCT 27479 29 100.0 32 ............................. GACCAGGCGAAGGACGTGCAAGAGGCGATTGA 27418 29 96.6 32 .........................C... ACGTTGACGGCAGTGCGCCCGGGAATGCCACG 27357 29 89.7 0 ..........T..A......A........ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTATTTCCCGCGTGAGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGCTACCTAGCAAAGGTGGCGGCCGATCCGTCAAAGCTCGCCTGGACGCAAGCCAAAATGGCCGCTTGAGAATAAAACAGCCTATCTCGCAAAGCCATGGTTATGACATGCTTGCGGCACGCGGCAGTTTCCAAGGCGGGTTTGCTTTCACACGTCAATAGTCTTTTTGTCCTGTAGTCCATCAGCAACACGGTGCCAGCCACGCGCCTCTAGCTCACGCCATGAGCCAGTCGGGTGCAAACAATGGCTGCACCACGACCCACGGAGGAAGAAATGGCAGCGCTTGCAATTCAAGCAAGCTGCATTTCACTGAGCCCGGTTGCATTTGATATTCGTCATTTTATGGATGCGTTGCATGACGCGCTTTGACACCCTCTCCCCAGCCGCCCGCGCCATCTGGGCCAAGAGCGGTGACCCACACGGCCATGGTTTATTGGCCCACATGCTCGACGTCGCAGCCGTTGCCAGGCGTTTGATCGAGCGCGAACCGCCATCGACGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 16222-16668 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387216.1 Azohydromonas australica DSM 1124 H537DRAFT_scaffold00023.23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 16222 28 89.3 31 ...CA.......A............... GTCATCAAGCTCAAGCACTCCGCCCTCGTCC 16281 28 82.1 32 TG.GA......................A TATTCAAGTGAGGCTATCAAGGGAATCCCCTG 16341 28 89.3 32 ...C.......T...........C.... ATCGGGACTCTGTGCAATGGCGCGAATGGGGT 16401 28 100.0 32 ............................ ATCAACAACCGCTCCGAGATGGTAAGTTGCTG 16461 27 92.9 92 .......................-..C. ATAGCGAGCGGAGCGACAAGGAGCGGTGCAGCGAATGTCGGCCACGCAGGCCGCCTGCAAATTCAACATTAAGGGAGGCAATCGTCCCGCGA 16580 28 89.3 32 T...C.............T......... ATCAAGGCGGCGAGCCAAGCATGGCAGGAAGA C [16582] 16641 28 78.6 0 T.C....................C.TAT | ========== ====== ====== ====== ============================ ============================================================================================ ================== 7 28 88.8 42 GCTTTCGGCCGCGCAGGCCGCTTAGAGG # Left flank : CGCGCGATATGGCTTGAACATGCTCTCGGCCATCTCTGCCAAGGGTCACCTGCGCTTCATGACGATCGAAGGCCGGCTCAATGGAGAAACCTTCTGCGAGTTCCTGCGCCGCCTGATCACGGGCATGGACCGCAAGATCTTCCTGGTGGTGGACGGACACCCCGCACACACCTCCAAGCTGACCAAGCGCTTCGTCGAGAACAACGCCGAGCGGCTCGAGTTGTTCTTCCTTCCTGGGTACGCGCCCCAGCTCAATCCCGACGAGCTTGTCTGGGGTCACGTGAAGGCCCGCGTGGCCAAGGCAACAGCGCGGACCAAGGACGAACTCAAGCGAACGGTCTACCGAACCTTGCATCGACTGCAGAAGTTGCCTCGAGTGGTTGCGAGCTTCTTCCACGCACCGACCTGCCGCTACGCCTCAGCATGAAACTTTACTTACGCCGGTTTTAGTAAGTTGACGCAGTTCGCCATGGCTTTCACCCGCGCAAGCCGCTGCCGTG # Right flank : TTTACCGTGCAGAGCCTCATGCACATGGCAAGCTGTCACGCCCGTGAAAGGTGTTTTCCTATGAGCAGCTTGTGCCCGAACGCTTGGCACCGTGCGCCAGATGCTCTCGCCGTGCATATGGCGCTGGATGCCTGGAAATGATGACTTCCAACCATACACGGTCGCTTGCCGATTTCATCGACGACCTGGCGCGGGCGACATCCCCGACCAGGACCATCAAGAATGCCTTGCTGCGCACCCAGCCCGGTTGGCTGCGTCTGGAATCCTCACAAGAGCTGGCGCAGTTGCTCGCCTTCTTGCTATCCGTGGTCCACGCCGACAATGGCAGCACGCTGATCAGCGGCAGTACCCGGGCGGGCCTCACGACAGATGAGCAGATAGCGGCCTGGCACATTGCGCTGCAACCGCATCCGTTCCTCAGCACCGGCTCGGGCTCCCCAGGCAAGTCGAAGCGCAAGTCTGGCGCCGAGCCGGTGCCGTTGGTCCAGGAGGACCCGGCG # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTCGGCCGCGCAGGCCGCTTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //