Array 1 160397-159225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUK01000010.1 Salmonella enterica strain BCW_6579 NODE_10_length_188804_cov_3.14314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 160396 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 160335 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 160273 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 160212 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 160151 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 160090 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 160029 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 159968 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 159906 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 159803 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 159742 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 159681 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 159620 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 159559 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 159498 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 159437 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 159376 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 159315 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 159254 29 96.6 0 A............................ | A [159227] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177900-176529 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUK01000010.1 Salmonella enterica strain BCW_6579 NODE_10_length_188804_cov_3.14314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177899 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 177838 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 177777 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 177716 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 177655 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 177594 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 177533 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 177472 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 177411 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 177350 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 177289 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 177228 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 177167 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 177106 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 177045 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 176984 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 176923 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 176862 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 176801 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 176739 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 176678 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 176617 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 176556 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //