Array 1 426849-428034 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABT01000011.1 Salmonella enterica subsp. enterica serovar Newport strain R8_1598_R1 NODE_1_length_609751_cov_1.34691_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426849 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 426910 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 426971 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 427032 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 427093 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 427154 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 427215 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 427276 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 427337 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 427398 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 427459 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 427520 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 427581 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 427642 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 427703 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 427764 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 427825 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 427886 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 427947 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 428007 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444704-446319 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABT01000011.1 Salmonella enterica subsp. enterica serovar Newport strain R8_1598_R1 NODE_1_length_609751_cov_1.34691_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 444704 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 444765 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 444826 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 444887 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 444948 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 445009 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 445070 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 445131 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 445192 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 445253 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 445314 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 445375 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 445436 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 445497 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 445558 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 445619 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 445680 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 445741 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 445802 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 445863 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 445924 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 445985 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 446046 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 446107 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 446168 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 446229 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 446290 29 100.0 0 ............................. | A [446317] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //