Array 1 101984-100335 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWR01000005.1 Pasteurella multocida strain HND16 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 101983 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 101923 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 101863 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 101803 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 101743 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 101683 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 101623 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 101563 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 101503 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 101443 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 101383 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 101323 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 101263 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 101202 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 101142 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 101082 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 101022 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 100962 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 100902 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 100842 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 100782 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 100722 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 100662 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 100602 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 100542 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 100482 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 100422 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 100362 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : GACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15571-16078 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWR01000006.1 Pasteurella multocida strain HND16 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15571 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15631 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15691 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15751 28 100.0 32 ............................ TTAGCCACCATCTCGGCAATCTCGAGCCGGCG 15811 28 100.0 32 ............................ TTAATTTTCGTAATGCAATTTGGGAAATATGC 15871 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15931 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 15991 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16051 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //