Array 1 4787-6295 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFE01000011.1 Bifidobacterium moukalabense strain GB63 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 4787 36 100.0 28 .................................... GACGGCGTATCTGGAATGCTCGTATTCG 4851 36 100.0 28 .................................... AGGGAGCCGTGAACCGGTCGAGCATGCT 4915 36 100.0 29 .................................... GATTATCCGAATCCTTATACTCGATCTGA 4980 36 100.0 28 .................................... CGGGAGAACTTCATGATTTCCGTGAAAA 5044 36 100.0 28 .................................... GGTGAAGTACATGAGGTGTGCTCGTGCC 5108 36 100.0 28 .................................... GCAAATGCCCATCCTACAGGTGCCGTGC 5172 36 100.0 28 .................................... CTTTCGCCCGCTCGACGTCACCGGTGAT 5236 36 100.0 28 .................................... TCGCGCGTAGCACACCGTCCTGCCCCTC 5300 36 100.0 28 .................................... TGATGCGGACACTTTGATGCACCGCTTC 5364 36 100.0 28 .................................... CGGTAATATTCCTTCAATCCGATGCCGT 5428 36 100.0 28 .................................... GCCATCCGCACGGATTCCACATCATCCA 5492 36 100.0 28 .................................... TAGAATCCACGCCGCACTCGTGCAGAAG 5556 36 100.0 28 .................................... AACAGAAGCGGCGCATCGCATCGCAGGA 5620 36 100.0 28 .................................... GCCGGAAGCATCACAATCGTCCACGTCG 5684 36 100.0 28 .................................... CTGGTGCCGATGTAGGGCAGCCATGCGA 5748 36 100.0 28 .................................... GGGATGCCGAGTATGCCGTTGGCTGTTT 5812 36 100.0 28 .................................... GCCGGAATGTGGATGGCCGGTTCTTCGC 5876 36 100.0 28 .................................... CACTATCCGAAACCGTCAAGACCCTAGC 5940 36 100.0 28 .................................... CGGTGGCATGGCATCACGCTCGCTGGCG 6004 36 100.0 28 .................................... ACGGCACTGAGGATACCTACTGCGAGCA 6068 36 100.0 28 .................................... AACTGCCCGGATTCTTCACGAAGGATTG 6132 36 100.0 28 .................................... TCAGCCGCACGCCGAAGGTTACGGGCAA 6196 36 100.0 28 .................................... AACTGTATGCGACAGCTGATCCGACCGG 6260 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 24 36 100.0 28 CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCTTGACGATACCAAGTTCAATAAGCAGTTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGAGGTATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGAAGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGATGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAAAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGTGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAAAACCTAGTTAAAAGGCGGAAAATGGCCCTTCTTGGCAAGCATA # Right flank : TAAGCGTGACATCGTGTGGCAAGTTTTATCAAATGGCATCTCCTTTCGAAGACGCCATGCGACTTCTCGTCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTTCCAACGCGGACAGGAGATGGTCCTTCCTCGTCCGTTTCGGATCGACGATGGGCATTCCCTCTCGGATCTGGTTGTAAATGGATGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCTCGGGTAGTTCGTTGGCGAGCTCGTCGCAGCCAACCGCACGTATGGATTCCCCGAGGTCAGTCAGGAATCGCAGTTGCTCCTTGGCGGTTCGCTCCGAGAGGACTTTTTCCGTCCTCCAGTGAGGAGTGACTGCGTTCCATTCGGCGAAAGCCGTCATCATGTCGTGTTCCATGTCCAACACATAGTCGGGCACGTCCGCCCCGCGAACGGGTGCAGGTTCCATCGTGGAAGCCGGTTCGTGGAATGGTTCTTGGTCGGCGCATATGGTCTCTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 3396-167 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFE01000024.1 Bifidobacterium moukalabense strain GB63 contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3395 36 100.0 35 .................................... CCGCATCCTCGGCCACGGCATAGGGGCCATTGCAG 3324 36 100.0 35 .................................... GGAACGACAGGTACATGTGACGCAACCATTTGGAA 3253 36 100.0 37 .................................... CCGATCGAATTGAGAACCATGTTATTCATGGCCACCA 3180 36 100.0 35 .................................... ATCGATTAAGTGCGCTGGAACTATCGGCATCAGCC 3109 36 100.0 40 .................................... CAGCAGAGAATCCCGGACGTGACTCAGGCCGGTATCCATA 3033 36 100.0 35 .................................... GGTTCCAATAGTGTGCCGGTTGAAACATTGCCCTT 2962 36 100.0 35 .................................... TTACGGGCCTGAGCGATGGCCTTGTCCAGATCACC 2891 36 100.0 38 .................................... CTGCGATTTCGATCGCACTTGCTGTTCCAAGCAGAAGG 2817 36 100.0 36 .................................... CTCTCGGGCAGCATCACTGGAAGCGCTGCGACCGCA 2745 36 100.0 36 .................................... GCAAGGATTGTGCGCAATGCTCGGCCATGTCCCGCC 2673 36 100.0 37 .................................... TGGCGGCAGCTGCGGCACATACCCCACCTACAAGGCC 2600 36 100.0 36 .................................... GAGAACATGGATGCCGTCTACGTGTTGAAGGTGGCC 2528 36 100.0 37 .................................... TCCATGGAATGAGCATCACTGGCTCAAGCATCGATTC 2455 36 100.0 38 .................................... CGCTGGATTGCCAAGGATAGGGATGGCTATGCTGGCCG 2381 36 100.0 37 .................................... GCAAGTCGGCGTGTCGCACCTGTACAATGGAACCGTC 2308 36 100.0 37 .................................... CCAAGAGCTATACGGCTCCCTCGAACGCTGCGTACAT 2235 36 100.0 39 .................................... ACGACCCGAAAAACCGTGCTGGAGGGCTGCAACGTGCAG 2160 36 100.0 35 .................................... GGCACGCAAATGACATACGGGAGCCCCCCGAACGT 2089 36 100.0 35 .................................... CACAATCCAAAAAATGCAGCATCCAAGGATGCCAC 2018 36 100.0 36 .................................... CACGGTTAACGGACAGGCGGGAAACCATTGGAAAAC 1946 36 100.0 37 .................................... TGGACGCACAGTCTCCGGCACAGGGCCGCCACGCAGG 1873 36 100.0 36 .................................... TCTTCGATGGCCTGCATGGTGCGCTGTTTGAGTACG 1801 36 100.0 37 .................................... TCAGAAGAACCAGGAGGCCAAGCAGCGCACGCAGGAG 1728 36 100.0 38 .................................... AAGAGCGCCGAAGAACAGTTGAAGAGCGCGCAGAACGG 1654 36 100.0 35 .................................... GAGTTTGTCATCGGCAAGTGCCGGGCAATGCTCGG 1583 36 100.0 36 .................................... GAAGCCATCCGCCCCTACCTATCGATGGTGCATCAA 1511 36 100.0 36 .................................... GGTGTACGAGCGTACGGACTCCGATGTTGCGCCGGT 1439 36 100.0 39 .................................... CGCGCATGATCCGAGCTCGGCCTCCATCGGCGTCTACAA 1364 36 100.0 39 .................................... GGGTGCGTGACGGGTGGTTGACCCTGACGCCGGGCGACG 1289 36 100.0 36 .................................... ACGTGCGGTCTGCGTTTCGTCTCATCGTCCGCACGT 1217 36 100.0 36 .................................... ACGTGCGGTCTGCGTTTCGTCTCATCGTCCGCACGT 1145 36 100.0 35 .................................... GTCAACGGCAGCGGCCTGCGATTCACGCAGGACTC 1074 36 100.0 34 .................................... TCCTGCACGACCCCCAAGGCCACCGATTTCGACG 1004 36 100.0 36 .................................... GGTTTTGAGGAAATAGCAAGCAACGTGCTTGGATAT 932 36 100.0 39 .................................... GGCGGCGGGCGGGACGTCGAGCGATGAAATCAGCTTCAA 857 36 100.0 35 .................................... AAGACGTCGGCGCAGGAACTGTATTCGCTCGTATA 786 36 100.0 36 .................................... GACAGGTCAACGTCGCTCATACTGCACAGCTGCAAC 714 36 100.0 37 .................................... GTGACACGGTATCCGGTTGGACTAGGCGTATGACCGC 641 36 100.0 37 .................................... GCGGCATCGAACGCGGTGGACGTGAAACAATCACAAA 568 36 100.0 36 .................................... GTGATCACCGGACGCTCCGGCAAGACCGACGACCGC 496 36 100.0 37 .................................... TGCCTCGTCACAGGCTGGACATGGGGAAATCGTCTAC 423 36 100.0 36 .................................... AGGATCCAGGACAAGACCTTCACCGTCACGGAGAAA 351 36 97.2 34 .........T.......................... CTCCTGAACGTCACTGAAACCATCGCCAACGGCA 281 36 100.0 35 .................................... TACACGCATCCGGGGAACAAGCTGGGCGTCTGGCT GGACTCGT [251] 202 36 97.2 0 .........T.......................... | ========== ====== ====== ====== ==================================== ======================================== ================== 45 36 99.9 36 ATTCCTGAGCTCTAATGCTCAGGACTTCATTGAGGT # Left flank : TATTTAGTTGCATATGATGTGAGCGATGATTACCGTCGCAGTCATGTAGCGAAGATTCTTCAGCATTATGGAGAACGGCTGCAATACAGTGTTTTTCTGTTGCAAGTGCGCCCCTCAATGATGCTCAACGTACGCATGAAGATTGAGAAAGAGATTGACTACGAAACCGATTCCGTTGTGTTCTGCTCATTGGGGACAATTGCGCAGACGGAAGAGGGATTGGATTTTCTGGGGCATCGAGGATATGCAGACTTAGAAATTCCCACAATTATTTGATTTCAGTCAAAACGGCTGGGCTGTTTGATAACTAAAGAGTGTTTCGTCTTGCATGCGCACGAGAGGTGAATCACTTCCGAGACGCGCGGCAAGCGCTCGCATGTGGAAAATGGCGTTTCTGTGGGATTCAGCGTTCCCAGATTCGCATTTTTCATAGGGTATGAAGTACATCGCTCGCATAATTGCTTGAGATACATGTCACTACAACGCTCTACACTGAGACT # Right flank : TCGCAGTAGCGGCTTTGCGGCGAAAAGACGAACACCGCGTTTCTCTTTTCCGCCTGCTATACTGGCTCGTGTTTCTATGCCTTAGAAATACGAGCCAGAAAGCGGGCGGCGGCCATGATGCCTTATCACCTTCTTTCCGTTTCACGGGTCTCTGGCGGATCTGCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTCTAATGCTCAGGACTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //