Array 1 150273-148430 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSQF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain s07 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 150272 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 150211 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 150150 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 150089 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 150028 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 149967 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 149906 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 149844 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 149783 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 149722 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 149661 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 149600 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 149539 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 149478 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 149417 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 149356 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 149295 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 149234 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 149173 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 149111 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 149008 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 148947 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 148886 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 148825 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 148764 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 148703 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 148642 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 148581 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 148520 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 148459 29 96.6 0 A............................ | A [148432] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 167347-166404 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSQF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain s07 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167346 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 167285 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 167224 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 167163 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 167102 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 167041 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 166980 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 166919 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 166858 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 166797 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 166736 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 166675 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 166614 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 166553 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 166492 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 166431 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //