Array 1 105444-106191 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBEL01000001.1 Pseudomonas aeruginosa strain HIAE_PA11 1c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105444 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 105504 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 105564 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 105624 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 105684 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 105744 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 105804 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 105864 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 105924 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 105984 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 106044 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 106104 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 106164 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 116604-114716 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBEL01000001.1 Pseudomonas aeruginosa strain HIAE_PA11 1c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 116603 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 116543 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 116483 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 116423 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 116363 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 116303 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 116243 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 116183 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 116123 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 116063 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 116003 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 115943 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 115883 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 115823 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 115763 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 115703 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 115643 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 115583 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 115523 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 115463 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 115403 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 115343 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 115283 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 115223 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 115163 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 115103 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 115043 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 114983 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 114923 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 114863 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 114803 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 114743 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //