Array 1 287131-287705 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 287131 29 96.6 32 ............................T AGCTTGCATTGCTTCATTTGTTGCCTCCAAAC 287192 28 96.6 32 .................-........... GGCCTGGTCATCGGCCTGGACATCCTGATTCC 287252 29 100.0 32 ............................. GTTGACGAAGTGGCCTCGCAGCTCGGTAGCGA 287313 29 100.0 32 ............................. TCGAAGTGCTTCAGGCGTCGCGCGTCGGCGTG 287374 29 96.6 32 ............................G GTGGCACCCACGGTGCCAGCCACTACGCGCGT 287435 29 100.0 32 ............................. GACTCCGAGCGACCCCCGCCGTCGAACCTGAA 287496 29 100.0 32 ............................. GCCTCCCGCGGCCGCCCCGCCTGCCCACCCGC 287557 28 96.6 32 ........-.................... CGCGCGGTCACCGACCACGTGCCGACCTCAGT 287617 29 96.6 32 ..........................T.. AGAATCTGCGCGACAACCGCCTGGGCCTGAGT 287678 28 79.3 0 .....TT..AT..........-...C... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACGGCTCCGCGCCCGAGGTTTCACCGGATCGTGGTACCAAACCGCCCTCCTGGGGGCGGATTCATACCACGATCCGCCGCGATCGCGGCTCGGACCGCCGAAATCGCCCGGTTTGTTCCCGCCCGATGGGCGATCGTCGACCGCTTGCCCTATCGGGGCGGCAGGCGTCCACGATCAGCCCGGCACCGGTCCCACGGGCTGTCGGCGAGCGGACAAATTGGTGGTGGCGGTCAGCCGCATGGGCCACTGTGGACAGACCTGGCACCTTGACCACGAGCAAGGAGACTGGCCAGCAGATCGGCCGGCGCCGAATGGACACGAGCCGGTTCTTTCGGTCGTCTTGACAGAGCTCCCGCCGACCACCAACCGCTACGCTTCATGCAACCCTTGGACCACATCGACTCGACCCAGCCCATCCAGAGAGACACACCAAGGTGATCTTGGCGACCAAAGCGAACAAAAACGAGATAGTTGATCTCTAGCCCCGCAGGTCAGCAAGC # Right flank : CAGGGTTTCCGGCGATGTCCGCGTCACAAGCGCCTGCTCCCCGCGCACGCGAACCGACGGCAACGCTGGTGCCGTTACCAGTAAACGGCCCGATAACAGCACCGGTGTCCAGTCGCGGGGGCGCGATCCTCGAAAGACCCAGCTCGCGCGCGGAACCACAAGCCTGCCTCCCCGGAAGAACCCCCGCGTCCGATGTCCGTGAACGAGGCGTTTCCTCTGAAGCAGCAGAGCAAAGGCCGACGCCAGCAAGGGGCTTGGCGCGCGGACCCGGCAGCAAAGGTCGGGGAAGTCGGCGAGCCCTGGCGAGCCGCCGACCGCAGCGGTGCCCGCGGAAGCAAACGGCCCGCGACTGAAACGGACCGGGGCACATCTGCCCAAACAAACGCCACCGCAGCCGACCCCTACCCACCAGCCTGACCTGACCCCCGGAACGTCTCTAGCCGGCCGTCCACAAGGGACGATCAGCCAACCGTATCGCCTCCGGCACCGTGCGTGACCGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 298150-302998 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 298150 36 94.4 36 ............C.............A......... GCGTTTCCGAAGGTGGCCTCAGTTAGTACCACTCCG 298222 36 97.2 41 ..........................A......... TGGCGCCCCTTGGCGATGTGCTCCGCGTGCTCGCGGGTGCC 298299 36 100.0 34 .................................... TAGTGGAGTAGTGATCGCGCTGCTCCCACACCGA 298369 36 100.0 33 .................................... GGCGAGTAGGAGCAGCGCGCCCCCGATGACCGG 298438 36 100.0 38 .................................... CTCGACGGTGACCCGGATCCGCTCCTCGACGCCGAGAC 298512 36 100.0 32 .................................... CGCGAAGGTAGCCACACGGCCGGTGGTGGAAT 298580 36 100.0 36 .................................... ATAGGTTCGCGGCGTCTCAGTCCACATCACGCCCTC 298652 36 100.0 33 .................................... CAGGATAGGAGCCCCGGCAAGAGCTCCTATCCC 298721 36 100.0 34 .................................... CGTAGTATTCGGCGCGCGAGACAAGCGCGACCTG 298791 36 97.2 42 ...................T................ CGCGGTGAGCTGCGGGGTCTGCACGTCCTTGACCTCGTGGCC 298869 36 100.0 40 .................................... CCCCGGTGCCGCTGTGACGGTGTGAGGCCGGTCAGCGCCC 298945 36 100.0 38 .................................... TCCGCGATGGCGGCCGCCGCGTGGCTGCCGCTGTCCTG 299019 36 100.0 37 .................................... CCTCTGGGTTCATGCCGGCACCTCCACAATCGGGGAC 299092 36 100.0 39 .................................... GCCCGAAAGCGTGCTGTTCCACGGTGGGCTCGTGCTCGT 299167 36 100.0 40 .................................... GAGCGGCGGTTCGGCACCCGTCACGGCGCTGGGCACCGCA 299243 36 100.0 40 .................................... CTCCCAGTCGCCGCTGATCAGCCACGACGACCCCGAGCCG 299319 36 100.0 33 .................................... AAGGTGTGTCAAACGCCCAGGCGAGTGGAACAT 299388 36 100.0 40 .................................... GAGCGGCGGTTCGGCACCCGTCACGGCGCTGGGCACCGCA 299464 36 100.0 35 .................................... GTGTCGATGATCGCCCGGGCCATCGGGTTGGCCCG 299535 36 100.0 35 .................................... GGCAACCTCCAGGACCGCGACTTGCATGTGCTCAA 299606 36 100.0 33 .................................... CGTCCGGCTGCCGCCGGAGTGCCCGGAGTTCCT 299675 36 100.0 38 .................................... GAGCCAGGTCACGATCATGCCGGGCCGATGTCCTCGAC 299749 36 100.0 36 .................................... CCGGCAGGGCGCTCCGGTCGACTCGGTGGGCAACAC 299821 36 100.0 39 .................................... GATGGCCGACACCTCGATGAGGTGGGCCATCAGCCGGTT 299896 36 100.0 37 .................................... CGCCCACGGTCGGAGACCGCACCACCACGCTCTCCGA 299969 36 100.0 34 .................................... CCAGCGTCCACTCCCGGCCAGCCCACGTGAACTC 300039 36 100.0 35 .................................... CCCAGCTGGTCCGCCCAGCCCACCGACACCACCGG 300110 36 100.0 37 .................................... CGCTCACCGCCGATTGGGTGAGCAAGCGCACCGCGGC 300183 36 97.2 35 .....G.............................. GGCAGCACCGCGGTCAGCAGACCGATCCGCTCCTC 300254 36 100.0 42 .................................... TCGCCGCCTCGGAGAGAGATCGGGCGGCGGGTAATCCATGCC 300332 36 100.0 39 .................................... CTCGGCCATGATCGAACCTCCGGGTCAGAAGGCGCGCGG 300407 36 100.0 34 .................................... GGTTCTCGTCGTTGCGGGTTTGCAGGAACGCCGA 300477 36 100.0 37 .................................... CTTTGCCCGATGGCTGTTCTCCGCCCGGCTTGAACTC 300550 36 100.0 37 .................................... CAAGTTCACCACGCGGCGGGCGACGTGGGTCATGTAG 300623 36 100.0 36 .................................... CTCCTCACCGCCCGCGCCGAGCCCTGCGAGCACGGC 300695 36 100.0 39 .................................... GTCGGCGGTGCTCCTCCGCGCGCTGGAGAAGTCCCTCGT 300770 36 100.0 39 .................................... TTTTGAATCCGACCTATTTCATCGGTGTATATCGAGTCA 300845 36 100.0 33 .................................... ACCTCAATCGCCAGCACCATGACGGCCCGCAGC 300914 36 100.0 35 .................................... GTCGTAATTGGTGACGGCCAGCCGCTTGACCGCCC 300985 36 100.0 34 .................................... AACACCAGTTGCGACCATGTGCTCCCCCTCCTCA 301055 36 100.0 33 .................................... AAGCTGGGAGATGCACACCGGTGCTCATGGGCC 301124 36 100.0 38 .................................... CGGCAGGCGATGCGCGCCCTGCACCTGCACCGCACCGC 301198 36 100.0 38 .................................... CCGTCGAGGCCGAGCTCGAAGACGCGGTCCTCGGCGAC 301272 36 100.0 36 .................................... CTTCATCTCCATCGTCTTCCCCTCTCCCTCGCTCAT 301344 36 100.0 40 .................................... GCCAGCGCGAGATGGCGAAGTCGGGCGGCCGCGGCGACTG 301420 36 100.0 35 .................................... TCCCAAGCGATCCTCGCATCGGGGGTCACATTGGC 301491 36 100.0 39 .................................... TTGGCTCGCCTGTCCACCGCGGCGCGCGAGTCCGGAAAG 301566 36 100.0 35 .................................... GCGGCGACGACGGACTCGCCAAGCCATTCCTTCGT 301637 36 100.0 42 .................................... GAGCTGAAGCGCGGAGAGCGCCCATGGGTGCATCCGGCAGCC 301715 36 100.0 39 .................................... CGAGGCCCTCGCCGAGGATCCCGCCGCCCGGCCCGAGGC 301790 36 100.0 40 .................................... CCTGCGTGCGCGGCAGGTGGTCGTCGCCGAGGGAGGCCAC 301866 36 100.0 38 .................................... GCCTCGGGCCGGGCGGCGGGATCCTCGGCGAGGGCCTC 301940 36 100.0 40 .................................... GAGGTCGTCGCCGTACGCCCAGCCGGGGCCGTCGAGCGAC 302016 36 100.0 34 .................................... CCGGCCACGGCAGCGACACCAGCGCCTCGGTGCC 302086 36 100.0 36 .................................... GGAGCACACACCGATGAGCACCACCCAGACCACCGT 302158 36 100.0 40 .................................... GGCGCCGCTCCACCGAGGCCGGATGGAAGTGGGTGTCGGC 302234 36 100.0 36 .................................... CGGCTGGAGCCGCACCGACCTCGTTGAGCTCACCAA 302306 36 100.0 36 .................................... CTCGGACGTCGATGTCCTCGGCGCCGGCCCGAACGT 302378 36 100.0 35 .................................... CCATTATGGGGCAGGGTCGCCGACTTCCGGGAGCT 302449 36 100.0 36 .................................... TCCGTCGCCGGCACGGGACGACGAAGACGAGAGCTT 302521 36 100.0 34 .................................... GGTTGTCGATCGACCAGCGGATCGGGTCGGAAAG 302591 36 100.0 43 .................................... TAGCCATGACCGGGGACAGGTCCTGCGCCTCGTCGAGCAGGAC 302670 36 100.0 34 .................................... ACTCTGTGCCCCCTGTGGAGGCTGGTTCCCCGTA 302740 36 100.0 37 .................................... CACGAGGATCGAGAGAGCGCCAACGGTCCATCTTCAA 302813 36 100.0 40 .................................... GCGCCCTCCTCCTCGTGTGTCTTGCTGATGTGGTTTTTCC 302889 36 100.0 39 .................................... CGGTCCACGTTCCCCAGGCGCCCCCGAGAAGCAGGAAGA 302964 35 77.8 0 ........................-...T.ACATCG | ========== ====== ====== ====== ==================================== =========================================== ================== 67 36 99.5 37 GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Left flank : ATAGCGCAAGCCCTCGGGCACCTCGCCGTCCGCCGCGGCGCCGACGTCCGCTTCACCAAAACCAGCCGCGCCCTGGCCGACCTCGCCGGCGGCCACGCCGACCGCACCTGGCCCCGCCGCCTCGCCGAACTCGTCCGACCAGCCCTGCTGATCCTCGACGACTTCGCCATGCGCGAGCTCACCGCCCAGCAAGCCGACGACCTCTACGAACTCATCTCCGAACGCGCCCAAACCGGCCGATCCCTGATCGCCACCTCAAACCGGTCACCCGCCGACTGGTACCCACTGTTCCCCAACCCCGTCGTCGCCGAATCGCTGCTGGACCGGCTCATCAACACCAGCCACCAAGTCTTCATGAACGGACCCAGCTACCGACCCAACAAACGACCCGGCCGACCCGGCTCGACAACACCAGCAGCCACCAAGTAGAACATCAACCGAGGGCCACACCCTGAGGAATTACGTGAGCCCAGACCCGGGGAATTACGTGAGCGACGACA # Right flank : GAGCGATTGGCGTTGGTTGTCGCGCAGATTACCCAGGTTGCAGAACAAGATGGAATCCGTGGCCTGGTCGATCAGGTTGATGAGCTGGGTACGAAGCCGCAGGAGTTTGGCGGGGCGGGTGTCCACGATGAACACGCTGTACTGTACGCGGTCGCCGTACGATTCGAGCTTCTTGGCTACCTTCGTTCTCCGGACGTCGTCTGAGACGTCGTACGCGATGAGGTAGCGCCGTACGTGTTCCAGGCTCATCGGATTTTGACGCCCTGATATCGGGGCTGTGTCCCGTCGACCACCCCGAGGACGAGCCGCGCCTGGATTTCCATTGCTCGGCGCCACGTCACGTCGTACCCGAAGATGGGGTGTCGGAATGTGCCGGTGACCCGGCGTTCGTAGCCGGCGATGAGTGCCTTGCGTCCACGTTCGCCGATACGGGTGGTCCCGAGTGCGGTGGTGAAGTCTCGGGCGCGGATCTCGCCGTTGTTGAAGGCGTTGATGACGAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 317321-319506 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 317321 36 91.7 36 ....T..C................C........... GTCCCGGATCGAGCGGGGCGAGCTGCGCACCGACCG 317393 36 94.4 40 ....T..................C............ ACACGATCGCTTTCGAAACGGACGACGTTGTCCTAAAACG 317469 36 100.0 34 .................................... CGGTCCACGCCGGCCGGGACGCGATCGGTGTGGA 317539 36 100.0 39 .................................... CTCCTGGACCCCTGCTCCGTCCGGCCGCTGCCCGTTCGA 317614 36 97.2 41 ..........................A......... TGTGGGACACGGCGGCGGCGCCATCGCTCGGGTTCAGCAAC 317691 36 100.0 37 .................................... TCGATCCCGGGCTCAAGCTCACCGTGCTGGGCCGCCA 317764 36 100.0 33 .................................... GGTCGAAACCCTCGGCCCGACCCCGTGCGGCAC 317833 36 100.0 33 .................................... GTGGGCGTACGGCGGCAACGACGTCCCCGAAAG 317902 36 100.0 39 .................................... CGGCTACGGCGGGTACGCGACTCGACCGTTCCCCGTCAT 317977 36 100.0 35 .................................... CTTGCCGGACCCACTCGGTGCCTCAAGGTGAGTAC 318048 36 100.0 33 .................................... CGCCTACCAGGCGTACGCCGAGTGGGACGCCTG 318117 36 97.2 41 ......T............................. GACACGCCGCCGGAGGTCCGGGTGTTGCTCAACCGCACGGT 318194 36 100.0 35 .................................... CTCAGCCTCCTCGACGCGCCCCTGAGGCTGACCGG 318265 36 100.0 37 .................................... TCGCCCTGGAGCGGGGTCGTCCGGACATCCAGGAGTT 318338 36 100.0 34 .................................... CGGATCCGGCGAACTGGCCGCACGAGTTGCGGCT 318408 36 100.0 36 .................................... GCCTGCCGTGTCCCATGAGGACACGGGCACGTACGA 318480 36 100.0 42 .................................... CGGGATGAACGCCTCGCCACCGGTTGCCCGCTCGGCGTAGGC 318558 36 100.0 40 .................................... TCTGGTCATCGCCGGCACAATCGCGACCGAAGTCACGCGC 318634 36 100.0 36 .................................... GGCGCGTCTGCTCGTCAAGGGGCACCAGGCGTACGG 318706 36 100.0 32 .................................... TCGGAGGGTCGCGGCCCGCTGCTGGTGGGCAC 318774 36 100.0 37 .................................... CGCCTCTGGGGTTGTCGTTGGCCGGCACGCGGTGACC 318847 36 100.0 39 .................................... CTCCGCGGTCGGCCGAATTCCCGTCGTCGTGTCCGAGGC 318922 36 100.0 37 .................................... TCTGCTCGACGGTGGACGGGTCGACCGGACCGACCGA 318995 36 100.0 35 .................................... CGCTTAACAGCGTCTTCAACCCGGACAGCAACCGG 319066 36 100.0 41 .................................... CAGCTGTCAGAGTTCTTCACCGCCGCCGGGTCGGGTGCCGC 319143 36 100.0 35 .................................... GTCCATGTGAAGTCGAGATCGAAGGTCATGCACGC 319214 36 100.0 35 .................................... GTCCATGTGAAGTCGAGATCGAAGGTCATGCACGC 319285 36 100.0 80 .................................... GTCGTCGGCGCCGGCCCGCAGGCGGACCCGGCGCGACGAGGCGGCGTCCATGTGAAGTCGAGATCGAAGGTCATGCACGC 319401 36 100.0 34 .................................... CCTCCGTGATCGTGAAGCCGCCGGCCTCGACCGG 319471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================ ================== 30 36 99.3 38 GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Left flank : AATGGAGTCGACCGTCGCGCTCGGGCTTCCGGTCAGTGCCGTTCGTCGGACGATGACGGCCGGAGCATCAGGCGGCGCATCCGCCACCGCGCGGTCCAGGTCGTCTGAGTGGAAGCATTTGATCCACACCACCCGATCAGTCGGAAGCTCCGAAAGAGAAAAGGGCACCATCGCACCTAACATGAGAATACGGCGCCCATTCTGACGAGCAGTCGATGGGGGCGCAATCGCCCGCCCGGGGATCTGGGCAGCACTGTCCGGCTCCGCTTACTGACCGATCGACGATGTTATTCCGTGCGGAAGCTCGCTCGGCGCGGAATAGATGCCGGAACCAAAAGAACAAGATCTTGCACCGGGCCGCCCTCTTCGCCAAGCCACCTCTCGCGGATCGTTGAACCTTGAAGGGTGTTGCACCGGTGGGTGGTGCCTGGGGCTGTAGCGGGCCGCTGGGAGCTGCGGCGACCGAGCTTCCCAGCGACCGATCCTGCTTCGGCCGGGGT # Right flank : CAGGGTCGAAATTCTATCGGTCGTCAGCAGCGAACAAACCGGTCCACTGCGAAGGCTGCGTTCCCCAAGATCGAATGGCGTTGCCTGGGTTACGACCGCGGCGCGCTACACCACGCACTGGCTGGGCAACCACCCCTGCGACAGGTCCACGCTCACGGACGGGACGACGAAGGCTTCGCCAGCCGCCTGGAGGATCGCTGGTCCAGGTGCGGTGATGGCACGGCTGCGGTCTATCGCATCAAGGGTCGGCGTTGATTATCAGGCAGAGTACCTAATTAGTTTCATGACGGCACCCACTCTGGCGAGCCGGCGATGGGATGGTACGGACAATCGGCAGGACGCCTCAATGAATGGCAGCTCCGCTGGGAGCTGGGCCGTTGCCGTGGCCACCCACGAGTTCGCGCCGGTCCGCATGACCTCGCCTCAATGAAGGGCAGCTCCGCTGGGCGCACCGCGACGCCACCCCACTCCTCACCTCGCACGGCTCGCGGTCGCGGATC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 4 327819-329313 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 327819 30 80.0 30 .....................TG.TC..AC TCGGCCACGAAATCGATGTCGCCTCAAAGA 327879 30 93.3 31 ............................GT AGTGCTGAACAATGCCCGGGTTGTTCGATCC 327940 30 100.0 31 .............................. ACAACGTCCTGTCCGGGAACCCGGCCCTGTC 328001 30 100.0 31 .............................. ATGGCGCCGGACGTAACTGCCGCAAGCCATT 328062 30 93.3 31 ............................AC GCCGAGCACCTTCTCGCCGGATCCCGTGCGC 328123 30 93.3 31 ............................GC TATCGCCGCCCGCCTGGCCAGCTGCGGTGCC 328184 30 96.7 31 ............................T. GTCGCTGCTGTCGCTGCCGAAGCTGTGACCC 328245 30 96.7 32 .............................A CCGGGGACCAGCGCTACGGCATCGCCCTCACC 328307 30 96.7 31 .............................A GCCCGAAGAGCCGCTCAGGCCGAGGAAGCAC 328368 29 93.3 31 .....................-......G. AACGCGCCCTCGACAACTTCCGCCGCAGCAT 328428 29 90.0 31 .....................-......GT ACCCGGTGATCGCCGGGCTCGGCGCCGCGAT 328488 29 93.3 31 .....................-.......T CGGCGCGGACCGGAATGGACGACGCCGCAGG 328548 30 96.7 31 .............................C CCTATCACCCACCACCCCGGCGACCTCTGGC 328609 30 100.0 31 .............................. CGGCGGTGAGCACGGTGACGACCGAGCCGAC 328670 29 96.7 31 .....................-........ ACCCCGCCCCGGTGTGGACCGACCTCACCGC 328730 29 93.3 31 .....................-.......T GGTCACCTGCGTGACGACCAGAAGGAGAAGC 328790 29 93.3 31 .....................-.......C GCTGGTACGCCCACTGGGCCGCCTCGCGCCG 328850 30 93.3 31 .............T...............T TGGCCGCCACCATCCCGCAAACGTCGTGGAT 328911 30 96.7 31 ............................G. ATTCACGTCTTCCTTCGGGGCGGCTCGACTT 328972 29 96.7 31 .....................-........ GTCGAGCGACCATCCGGGAAATGCAAAGTCT 329032 30 96.7 31 .............................A GTCGCGCGATCATCAAACTAGCCAGCGCGGT 329093 30 83.3 39 .C..........T..A.C......A..... TGCCGGATACCAGGCTCTTCAATGTCGATGACGTGTATG 329163 30 93.3 31 ..............T..............C GATGCAGAAGAACGTCAAACTGCTGTGGACG C [329179] 329225 29 86.7 30 ............G........-......TC AGCGGTCCAGTCAGCAAAGTTGACCTCGTC 329284 30 90.0 0 .....G.G.............A........ | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 93.7 31 CTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCAACCACCACCCGACCGAAGCACAGCGGGTCATCGACGGCGCGGTAAGGCAGGCACGCACCCCGCACCTGAGCATCCTCGGCGACCCGCCAGACCCCGGCTACCCACTGTGGCTACGCCGCCTGGCACCCGACGCCCGGTGCGTGGTCTACCCACAGACCGGCCTGTTCCCACACCTACACCAGGTCACCCGCTTCGCCGACGACCTGCGCGCCCTGTTGTAGAGGTCGTCCACCCCGCAAGGAGGCGACGGCCACCTGTCGTGGTGGCCGTCGCCCTCGGCTGCGGGGTGGTGGCAGGTGGGCTCGCGGACAATGCGCTGGTGGCGGCGCCGCTGCGGCTCACGAACGGATGAAGGAACTCCCAGGCGTCGGGATTCGCTACGCTTCACCCAACCTTCGGACCACATCAACTCGCCTGGAGAGACACACCAAGTGATCTTGACGAACAAAGTGAAGAAAAACGAGGAAGTTGATCTCTAGACCCGCAGGTCAGCAAGT # Right flank : GCTTTTCGAGCAGTGTCCACAACAGACGGAGCGAGGCCGAGTTCCTTCGCGTGACGGCCGCGTGAATGAACTGAGGCTGCGCAGCGAGTTCGATGCCTCTCCCCCGACGTCTGGCTAGTGAAGCGTGGTCACGGGCGCGGCGAAGAAGCGCGTCGACGGCCGGGTGCCGTGAGGGCCGACCAGATGGTGGGTCAGATCGGTGGTTTGGTCGGGAGCGGATCTGTTCGGCGGGTTCGAGCGCGTCGTGGTTCCTTAATCTTGTTCCGGGCGCGTCGCCGGGGTGTGGCCGCTTCCGGGGGTGCGGCGCCCGAAGCGGCGACGCCTCGACGCCTTGCTCCAGCCTTTCGGCAGGGCGGGGTTGTTGGTGGTTCGCTCGGTGGGTCGGCGGATCAGGGTTATGCCGTCGAAGTCGACCGGCTGCCAGTGGTGGTCGTGTATCTGGAAGCACAGTCGTTGTTCACCCGGCTGTTGGTGGACGAGCAGCGCCCGTCCCAGTCCGG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 347633-345724 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 347632 28 100.0 33 ............................ CGTCACGAGCATCCACAACGCTTTGCAGGTCCT 347571 28 100.0 33 ............................ GGACGGCGCCGGGCTAGGTGCGGTCGCCGCGAC 347510 28 100.0 33 ............................ CAGTCCCGCCATCCAGGAGGGCGCCGCTACGGC 347449 28 100.0 33 ............................ CTCGACGTCGTCTACCAGGGCGCCTTCGCCACC 347388 28 100.0 33 ............................ CGAGCGCGGCAGATCATCCTCCGCACCCTCCGG 347327 28 100.0 33 ............................ CTGCCACTGTGCGCGGCGAAGCTGGAGGCTGTA 347266 28 100.0 32 ............................ CTCCACCCCCGCGAAAGGCTGTGTATGGCCAG 347206 28 100.0 33 ............................ CTGGTCCGCACGCGAGACCCCCATGCCCACCAA 347145 28 100.0 33 ............................ CACCGAACTCGTCTGGTGGGACGGCGCCAAGAC 347084 28 100.0 33 ............................ CACCGCCTCAGCGCGGGCGGCCTGGATGTCGAT 347023 27 96.4 32 .................-.......... CCCGAAGATCAGAATGTATGTGCCGACCTTGA 346964 28 100.0 33 ............................ CGCAGTGCGGGCACGGCTCCCCGAAGGCGAACG 346903 28 100.0 33 ............................ CGCGGCAAGCTCGCCGGTCTGGCGCTTGATATT 346842 28 100.0 33 ............................ GTTCTTTGTCCGTACGGACGGCGGCCCGAAGCC 346781 28 100.0 33 ............................ CGAAACAGCGTTCATGGCCGTTGCGCTTGTTGC 346720 27 96.4 33 .................-.......... CGGTGAGAGTCCAACGTCCAATCCGGACACTGG 346660 27 96.4 33 .................-.......... CATCCAGAACAGGGCGAGCACGATCAGCAGCGT 346600 28 100.0 33 ............................ CTTGAGACCGACAGTCCACGAGTTGCCTGCCGA 346539 28 100.0 33 ............................ CGGTCGCATCAGCCCATGCCGGCTTGAGCATCC 346478 28 100.0 33 ............................ CGATCTACTCAACGCCATCGGTTACGAAGGCAT 346417 28 100.0 33 ............................ TGTGGCTGTGTCGTCGGGCACGGCGAGGATCAC 346356 27 96.4 33 .................-.......... CCGTCTATGGAGGGTGTGTCCATTGCAGACCTT 346296 27 96.4 33 .................-.......... CGCCAGGGTCACCGTGACCACCCGCAGGATCTG 346236 28 100.0 33 ............................ TGGGTCATCGTCGAGCTGGACGGCGACTTGTCC 346175 28 100.0 33 ............................ CTCCACCGTGACGGATGTCCGGGACGCAGAATC 346114 28 100.0 33 ............................ CGTGCGCCTAACCGACCGGCTCACCCTGTTGGA 346053 28 100.0 33 ............................ CGCCTGCACCCACTGGTAGGGCAGCAGCGTCTC 345992 28 100.0 33 ............................ CGGGGATCCGCAGATCCCGACCGACCGGCTCGC 345931 28 100.0 33 ............................ CGCCTCAGCCAAGCGATCGACTGGGAGATCCGC 345870 28 96.4 33 .....................A...... CTTCGGGTGGAAGAACCGAATCGGGGCGTACTG 345809 27 92.9 30 ............T........-...... CGACGACACCGCCGACGAGGGTGAGATCCT 345752 28 82.1 0 .G...G.T.......C.T.......... | A [345730] ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.5 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCTGTCGATGGTTGTCGGTCCCGGATCGGATACTCCAGTACCAGCTCTCTGGGGTCGGCCCAGACCCTTTCGCCGTCGGCGAGGACGACCTGCCTGCGCCCGTCCCCGGCAGGCGCGCTCACCCCGTGCACAGGCACACCGTGTCGGTCGCGGCCTCGCGGTGGCTTGCGGTTGGCGGCCGGCCGGTACACCCACGTCGTTTCGAGCGCTTCCGACACCCGGTACCCCCGTACGTGTGTTCGGTCGAAGAGACGACCTTAACAGCGGGGAAGGCCGGGCCGTCGGATGACGTGCCGAGCCTGGAACAGGTTGTCCGATGTGGCGTCGGGCGGCCCGCCGCCCGCGAGTGGCTGATAGAACTTCCGGCAGCCGCTACGCTTCCCGCAATCCCCGTGCCGTATCGCCCGAGGCCCGACCGCATGGAAGACCTCAACATGATCTTGGCGATCAAAGTGAAGAAAATTGAGGAAGTTGATCTCTAGACCCGCAGGTCAGGAAGT # Right flank : TTCGCGTGGCCGGCCGTCCAGGTGTCAAGGGCGTCGAGTCGGGCCGCGAGCGGTTCGAGCCACAGGCGATCGGGGAGAAACCTAGGCTGAAACGGTGACGGACGAGCGCAGGCAGGCCGCGCTCGACAGCCTTGCCATGCTCGCCCAGCAGCGTGAGGAGATCGAGGCCGAGATCACGGCCGCCGTCGCTCATGCGTTGAATATGCGGGCCACCTGGGCGCAGGTCGAGCGTGCTGCCAGGCTGCAGCGCGGGACCGGCCAACGTCGGTACGGGCCGCTGCTGGTGGAGGAGCGGCGTTTCCGGGTGCGCGGCGAGAGTGGCGACAGTGGCGATGCGGAGTGACGGGCCGTGACGGCGTGGCGTCGCTGTGAGCCCACGCCACCTTCAGCCGGGTGCGGCCAGGACCGTCCGGTCAGGACGGGAGGCCGAACGCGCCTGCCGTCAGGCCGTCGCCGATGTCGCGGGCCAGTGTGGCTCCGGTGGCTGCCGCCTGGTCGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 6 351295-350472 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 351294 30 100.0 31 .............................. TTGGATCGATACCCATTGCGTGGGCGCCGCG 351233 29 90.0 31 .................-..........GT CCACTGTCGACGGACGGACCGAACAAGACGA 351173 30 100.0 31 .............................. TGGGCGACGCCCGAAGGCCATGCCGCTGTGG 351112 30 96.7 31 .............................C GGCCGGGAGGCCACCAGCAAGGCAGGGAGGA 351051 30 93.3 31 ............................GA CCTGCGCCGTATAGGCGACGGCGCAGCTCCT 350990 30 93.3 31 ............................TA AAGACAGCGAAGATGGCCAGTCTGCGATCAG 350929 30 100.0 31 .............................. GCACCCGCCAGGCGTACGAGATGATCCCCGC 350868 30 96.7 31 ............................G. CGGCCTACAAGCGCGCTTTCGCGGTGGGTAC 350807 30 96.7 31 ............................A. AGTTCGCTCTCCTGCTCATCGCGGGCATCGT 350746 30 96.7 31 .............................A ACCAAGGAAGTCACGCGCGGGTTCTGCACGG 350685 30 93.3 31 ...........A.................T CGGCCCAGTAGTTGTCGTCGCCGACCGTCGC G [350668] 350623 30 100.0 31 .............................. TGGCCGGCTCCAACACCGCCGGTTCGTGGGT 350562 30 93.3 31 ..............T..............A ACGCTGAGATCGTGGGGCCGATCGGCGGTTG 350501 30 80.0 0 .....T......T.T...........T.AC | ========== ====== ====== ====== ============================== =============================== ================== 14 30 95.0 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GATCGGCGTCAGGTAGACGTCGCCCGTGAAGTTTCGCGCGGGCGTCTTCACCGTGGGGCTGACGGGCCTGAGCTCCATGCGTACTCCTTCTTGACACCGGCACTGACGGTCCGACCCGGCACGAGGACGGCAAACTCACTCGCCGACCGCGGCGGGTTGGCCGCGTTCGAGGCGGGTGTGGTAGTCGAGGCTCACGGCGACCTCGCTTCCCGCCGAAGTCGGGAAGCCCGGCCTGCTCAGGGGTTACGCGCGCCCGCCGTCCTTGGTTCTCACGACCTTCGACGCTATATCCGTCTCGTAGGCGGGCCCAGAGCTTCACCGGAATCCAGGGCAGACTCGTGTCGGGGTGAGGAGGACCTTGATGGCGCGGCGCTCGTACATTGCCCGGATCGGCCTATGCAAAGATTCTGGGTCAGCGGGGTTCGGCCATCCATCTGCACCGCGTCGGCAAAGTGAATGAAATCCAGCTCGAGCCGCCATAAACTCCCAGGTCAACAAGT # Right flank : GTCGGGCCGTGGGCGGTCGGGATTTCCCGGGCGCCGACGGACTCGCCGATGGCCCCGGCTAGGCCGCGTTGCTCGTTGCGTACCGAGCCGGGGGACTGGAATGGGCTGGGTCAGTCGCGTGGGGCGGTCCCGATGTCGGTCAGGCGATAGGTGTCCAGCAGCGGTGCGTCACCCAGTTCCTCCAGGATCAGGCCCCACCGCGCCGAGTGCTGGAGGTACGCGGAGCTGTGGCTGATCGCGTAGGTGCCGTCCGGGCGGGTGGTGATGGTGAACCGCTGCTGCGTGTCGCGGGCGTCGCACGGTGCGCCCATGACCTGTAGCGGCTCGGTGCTCTGCGGGTGGTAGACCTGCCAGCAGGTGGCCTCGCGGGTGGCCGGGTCGTCGGTGAACCGGCCGTACGACTTGATCAGGTACTGCCCTCGGCCCACCGGTGTCGCGACGAAGCGCTGCCTGCCGGAGTCGTCGTCCGCTTCGGTGAGCCATCCGTTGTCCATCGACAG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 355157-357392 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 355157 29 100.0 32 ............................. ATGATGCCAGGGGCAAGCACCTCGTGTCCTGG 355218 29 100.0 32 ............................. ATCAAACGATACTCCGAAATTGGAGGCATCGA 355279 29 100.0 32 ............................. GAACAGCCGACATCATCAACGAAACCATCGCC 355340 29 96.6 32 ............................T ACTTCCCCATTTCCCCGCGCAAAAGAATCGCC 355401 29 100.0 32 ............................. TTTATACGACGGTTCCACCGTCTGAGCTGGGC 355462 29 100.0 32 ............................. GACACCGACGCTGAATCCACGCGCAAGGTGGC 355523 29 100.0 32 ............................. GACGGGGCCGACAATAACGTGCGGTTCCTCGG 355584 29 96.6 32 ............................G CACGCATAGGGCACGACACCCGCTCTGACCTG 355645 29 100.0 32 ............................. CGTGTGTCCGTCAACTGCACCGAATCCGGGGC 355706 29 100.0 32 ............................. TCCCGATCCCAAGCCTTCTGCTTGGTGTAGTC 355767 29 100.0 32 ............................. CGGGCCGCCCCTGACTGCAGCCCGTCACCGAG 355828 29 100.0 32 ............................. CGACGTCGACAAACTCTTTGTACGGGCCGAAT 355889 29 100.0 32 ............................. TACCTGTTCGCGTGCAACCAACATTGGTTGGC 355950 29 96.6 32 ............................G ACGGGATAGCCCGCGGGCTAGGGCTGCCCGAC 356011 29 100.0 32 ............................. TACATCCAGGCGAAAATGCGCGCTAGCAAGAC 356072 29 100.0 32 ............................. ATTGCCATCGCCGGACACCAGACCAGCGCCGT 356133 28 96.6 32 ....................-........ TCAACACCAACGTCACGCAAGGCGCCTCGCAA 356193 29 100.0 32 ............................. TGGGCGGACGAACTGTGGAACCAGGTCGACCT 356254 29 100.0 32 ............................. CATCCACTTGTAGATAGCGCATGGGAAGGGGC 356315 28 96.6 32 ....................-........ CGTTACCGATTCGTGACCTGAACAGCACCCGC 356375 29 96.6 31 ............................T GGTACGTCAACCCCATCAATCCCCTATCAGG 356435 28 96.6 32 .....-....................... GCGTCGGCTGGAATGAAGAGAAAATGACAGCG 356495 29 100.0 32 ............................. AATCACGCCAGCTGAGGGACACTCACTACACC 356556 29 100.0 32 ............................. GAGGGTCGCCGCTGCGCTATCAGCGCGATCCA 356617 28 93.1 32 ....................-.......T TCTGTCGCATCGCGATGCGATGGCGCGATCGC 356677 28 93.1 33 ....................-.......T GGTTCCCGTGGGTCCCACGAATTGACCGGTGGT 356738 29 100.0 32 ............................. GCCACCAACATGCGCACGCTGGTGCGCGCCCT 356799 29 100.0 32 ............................. GCATCCGGCGTGAGCAGGACCTGTTGCTCGAT 356860 29 100.0 32 ............................. CTGGCCACGCAGTACCGCAAAGCAATGCTGGA 356921 29 100.0 32 ............................. GGGCCCCACAGTCCACACAGGAGTGCTGGACC 356982 29 100.0 32 ............................. GACGGCCCCTATTCGGACCTCGCCTACCACGT 357043 29 100.0 32 ............................. GGTTGAGCATCCTGACCGACGCGCTGCATGTG 357104 29 100.0 32 ............................. GTGGGGCGCCAAGTCGCCCGCGCGGTCAAGCA 357165 29 100.0 44 ............................. CACCGCATCATGCAAGTAGACACTGTCAAGCACGCCTGACCAGC CTGT [357172] 357242 29 100.0 32 ............................. TCCTCCGGCTCGTCGGCCATGTCTTCCAGCTC 357303 29 96.6 32 ............................G TATGCCCCGTCATCGGCTCGTCGGAAGGCCTG 357364 29 89.7 0 .....G........T.............G | ========== ====== ====== ====== ============================= ============================================ ================== 37 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGTCGCATCCAAGCTCCTGACGGTTCGCCCAACGGCTACACCCATGCTTGTGTCACCACCCACCCCGGTGATTACCGCACGAGCCAAGGTGGCGGTCCGCGACGGTTCCGCCACCCTGCGTACGCTCTGCGTGGCTCGCGTCGCTTCGGCAACGCCGACCAACCGCCACCGGGGCGAGGCTCCAGATGACCGGCGTGACGGCCTGCGGTCGCTGCGCGGACCGGCGCGTGGGATGGGACGACCGCGGTCGGCGTCACCGCGAGCGGGAGAACGGGAGCGGGCTCGGTTGGACGTACGCTTTCGCCGCCGCGGCGGCCCTGGTTCGCGCCCGGCATCTCGCGGCGTCCTGATGGGACCTTCGGATCACCGCCGACCGGTACGCTTCACGCAACCCTTGGGCCACGTCGACTCAGTCCACAGGAGAAACAAATAAAATGATCTTGACGATCAAAGTGAACGAAAACGAGATAGTCGATCTTTATACCCGCAGGTCAGTAAGC # Right flank : GGGCGGTGTGTCATCGGATCCGGGTCCGGTTCGTCCGCTCCCGCGCGGCGTTGTCCACGCCCGGGGCGAGTGCTGACAGCCGGCATGAATCCTGGCGGCGGGCTCGACCCTGCGACGTCAGCTACGCCGAACGAACAGCCATCCGGCGAGCGTCAGGCCAAGGCCGGCCAAGACCAGCCACAGCGTGTCGAGAACTGCCACTCCCAGTGCGATCAGCGCCGCACCCGCGACGGACAGCATGTATGCCTTCGGGCTGCGGCGCCAGCCTGGTGGCCGCCAGGCGGCGCGTCGGCGCGGAACCTGCTTCACCACGGGCGATCCTCCCGGTCTTTCTCCGCCGTCCCTGACCGATCAGGCTATTCGCTCAGGGCTGGGTTTGGTGAATCATGGGCCACCATGTTCGTGGATCAGCGACGGTTCCCCTTCCTTGCCGATCTTCGAGCGCAGTGGGAGTCCATCCTGGACGAATGCCTCGCTCTCCCGCGCGAGACCTATCAGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 7660937-7659308 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022871.1 Phytohabitans suffuscus strain NBRC 105367 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 7660936 36 86.1 35 .......C..C.A.......T............A.. GCCGCGAACTCGTCCGGCTGCCCAGGCCCACACGT T [7660915] 7660864 36 97.2 39 .......................C............ ATGGCGGCCAGCTCGGCCGGCTCTGGGATGCTGGTCATG 7660789 36 97.2 34 .......................C............ TGCACGGCTCGCCGTAGGAAGTGACGGCTCGCGC 7660719 36 100.0 39 .................................... GCCCTCACGCAGCGCCCCGGCCGACTCCCAGACCACGTC 7660644 36 97.2 39 ............................A....... GTCGCATGGGCAGTCGTGCCCGTGGCAGGCGTCGCAGTC 7660569 36 100.0 41 .................................... GAAGCCACGGCGCCAGTTCGGCACGCCCCCACATCGGCGCG 7660492 36 100.0 36 .................................... CCTGCTAGCCGACAATTGCGCGAGGCAGGTACGCAA 7660420 36 100.0 35 .................................... CGGCGAACTGCTCGACGCGGGCGAATCCGTCAGCC 7660349 36 100.0 39 .................................... CGTTGCGCCTTCGGTGGGAATCTACCCGACCGCTGACGC 7660274 36 100.0 37 .................................... TGAGCACACGGCAACGTGCGGTTGTGAAGATAAGTCA 7660201 36 100.0 37 .................................... ACCTGTTCTGTGGAGCGGGGGGGGGCGAGCATAGGCT 7660128 36 100.0 36 .................................... CACGGCCAGCGACGGCGGCCAGGTGCAGGGTGTGGC 7660056 36 100.0 37 .................................... AGGCGCTGCAGCAGGACAACCTGGCGGTGACGACCGC 7659983 36 100.0 33 .................................... GACGGTCGCTGAGGCCCACAACTGGCCAGCGCG 7659914 36 100.0 36 .................................... GGTGCAGCGCGACTTCCTGAAGAACGGCCGCTACAT 7659842 36 100.0 40 .................................... GCGCGATGCCGTTGCTGCCGTGCTCGTCGGTGTGGATCAA 7659766 36 100.0 31 .................................... ACGGCGAAAGCGAGTTCGCGCGGCTCGTCGC 7659699 36 100.0 32 .................................... GAGACTCTGAAGGTGGGCGTGACCATCGCCTA 7659631 36 100.0 38 .................................... CTGGTTTACCCCTGATCGGGGTACCGCTGCCGGCGCAT 7659557 36 100.0 33 .................................... CTGCTCGGCCTCGCGCTGAGCGTGCCAGATCCA 7659488 36 100.0 35 .................................... CGGCGTGATCCGGAAGGTCAAGGTGCGCTGATGCA 7659417 36 100.0 38 .................................... GCCCGGCGCGCATGGAAGTAGTCGCGCATCTTCGCCTT 7659343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 23 36 99.0 36 GCCTCGATGAAGGGCAGCTCCGGTGGGAGCTGCGAC # Left flank : AGCGAAGCGAGCGCGCTTGGCGGCGTCCCCGGGCGGGAGATCCGCTCGCGGTTCGTCACGGTCGTCGAGGCCCTCGACCGGCCGGAGCTGCTGGTACGCCTGCGCGACCTGGCCGAGCGCGGCGTGCTCACCCCGCGGGTCGCGACGACGCTCCCCGCCGCGCAGGCGCCCGAGGCGCACCGGCTCGTGGCCGGCGGCGGCGTCCGGGGACGCGTGGTCCTGACGTTCTGAGCATCGCTGTCGACCCTGCCCCGGTTCGTCCGCCGGTCCGCAGAGGGGTGGCGGGCCGGCGGGTCCTTGATCGGTGGCGGCTCCGGCCGTCCGTGTCGAGTTCCTCCCCCTGGCGGGGCAATTTCTCGCCACGGGCGCACCAGGGCACGGCGCGGCACGGGTCGATCAAGGGAGTGTCCGGGACAACGCCATGATCACGACCTTGGCCGTCGAGGGCCACGCTGATGCCCACTCCCGCCCACGGAAGCTCTTGCCGACAGCGCGCCGCC # Right flank : TGGGTCCAAATCCTAGCCGTCTTGAGCAGCGCCCGAGCCGTTCTGTTGCGAAGGGTGCGTTTCGCGGGCGACGGGTGGCGCCACCAGGGCTGCGACGGTGGTGGGCTTCAGGACCGTGCTGGCTGGGTAAACACCCGCGCGAAGGGTGCACGCGTACGTGCGGGATGACGAAGGCTTCGCAGAAGGCCCAGAGGATCACAGGCTCGCTTCGCCTATGGCCTTGTCTTCGACATCGCCGAGTTACGCCGACCCCGACCTACTTTGTCCCCGACTCATCCCGATCCTGGGATGAGTCGGGGATCGGAACAAAGTCAACTTACTCGACATCGGAATAAGGTGGCGACTTTCGCGCCGCGCCACGGCGCGTCTACGACGCGGCGCTGTTGGACATCCGCACCCGCCGCCCGATCGATGTCCTGCCGGGCCGAAGGCCGGCCCGCTCGCGCATTGGCTGCGTCCGTCCCGGTGCGCGGCTCATCTGCCACGACCGAGCCGGCACG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGGGCAGCTCCGGTGGGAGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //