Array 1 426343-426615 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JGYT01000001.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 Contig01, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    426343	    29	 100.0	    32	.............................	GGACGTATGGTGTGTGTTTGCGGTAGTCTTTT	
    426404	    29	 100.0	    32	.............................	AATCGGAAAACCCACACTCCCGACAACGGTTA	
    426465	    29	  96.6	    32	............................T	TGAGCCTGTGCGTAAGCATTGTTAATGCCCAT	
    426526	    29	  96.6	    32	............................T	AGGTGTTTTATCACCATGTCTCAGATATGCCA	
    426587	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         5	    29	  98.6	    32	GTGTTCCCCGCATACGCGGGGATGATCCC	                                	       

# Left flank :   GGATCATGTCGGCCTGTGGGATGAACGGTTGGGAGAAGTGTCTGCAGGGAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTTTTAACGGCATGCCCGGTGGGTTTGCGCGGTGACCTTACTCGGTGGCTATTGGAAATATCGCCAGGTGTGTTTGTGGGACATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTTTCAAAAAAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAACATCTTGCTTTTAAAGTGCATGGAGCTGAATGGTCTCCGACAGACTGTGAAGGCTTAGAGCTTGTAAAACGTCCTTCTGGCCCAAAGGAAGTGTCGTTTGGTGGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTCAAAAACCGCGAAATTATGCTAGTCTCTTAGA
# Right flank :  GTACCGTTAGTCCAAC

# Questionable array : NO	 Score: 5.99
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCATACGCGGGGATGATCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [68.3-13.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 4-279 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JGYT01000010.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 Contig10, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
         4	    29	 100.0	    32	.............................	AAGTCTTCGATGGATTCTTCATTATTGTCACC  	
        65	    29	 100.0	    34	.............................	ACAKACGGACGCGCCGCGCATTGTGTTTGACTGG	
       128	    29	 100.0	    32	.............................	AATAAAATACCACATATCAAGACTCCTTTGCA  	
       189	    29	 100.0	    32	.............................	CGCCTTGTACACGAACCCGACGACGCCGGAAG  	
       250	    29	 100.0	     0	.............................	|                                 	C [255]
==========	======	======	======	=============================	==================================	==================
         5	    29	 100.0	    33	GTGTTCCCCGCATACGCGGGGATGATCCC	                                  	       

# Left flank :   CAAG
# Right flank :  CTCATAGTTGAATACACCAATATCGCCATCCAGCTTGCCGATGATTACTACCATCGTGTGCGCCAGTCATGGGCCAATCATGCCGGAGTGAGCCTTCCGGCACTCGAACGATACGGGTTCACTGACGTCGACCGGGTACTATGGGCCATGAGGGGCGGCTTGGCCAACACCGACTGGAACGGTCTGAAATACCGGGACGTGAAAACCGGAAACAGCAAGGCCGTCATCACCATGAGTGACTTATGGCCAAACCTGGCCAATCCGGACGACGCCCAACAATTCATAGTCGATATGATGCGCAATGCGCTACGCCTGCAGACACAGCGTAACATTCGGCTGGATCCGAGCAATCCACGATGAGCCCGAGTGCCGCAGGGCAGGACGTGCGCTTTTTGCGCGATGCTCGCCTCGCGAGGATTCGCATACACCAGCCAGGAGGTCGCAGGCGGCGAGGGCAACGCATTCCACCACGATTGCGATTGCCGCATCATCCCGACATG

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCATACGCGGGGATGATCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.64   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//