Array 1 5622-5238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJVN010000094.1 Cohnella lubricantis strain DSM 103658 contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 5621 24 75.0 27 TG......TC.A...........C GTAGAGCCGGCGCGCGAGCGTGTATTC G [5615] 5569 24 100.0 27 ........................ GTGGCAGTGCCGCGGGCTTTTCGGGGT 5518 24 100.0 28 ........................ TATGAGGTAATGCGCGTTGTGCGTGTAC 5466 24 87.5 27 ..T........C...........C GTAGAGCCGGCGCGCGAGCGTGTATTC 5415 24 100.0 27 ........................ GTGGCGGAGCCGCGCCGTTTCGGGGGT 5364 24 100.0 28 ........................ TATGAGGTAATGCGCGTTGTGCGTGTAC 5312 24 87.5 27 ..T........C...........C GTAGAGCCGGCGCGCGAGCGTGTATTC 5261 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================ ================== 8 24 93.8 27 GAACAAGGCACTTTTTGTGCCTTG # Left flank : GATATCACGTATGTGCCGTGTCGTGAAGGGCGGTTGTATTTGGCGAGCGTCATGGACCTGTACACGCGCAAGATCGCCGGCTGGCGGCTAGCCGATCGCATGACGACCGATTTGGTGCTGAATGCACTGGAGATGGCCTACACATCGCACAGGCCCGCTAAAGGGCTGTTACACCATTCCGATCGGGGATCACAGTATGCGTCCGAAGCGTACCGCCAGCGACTGGAGACGTATGGCATGAAGGCCAGCATGAGCCGCAAAGGAAACTGCTATGACAACGCTTGTATCGAGTCCTGGCACAGCCTGCTGAAGAAAGAATTCATTTACTGCACGAAATTCAAAACGAAGGCTCAGGCCCAGCAAAAGATGTTTGAGTACATCGAGCTCTTCTACAACCGAAAGAGAATTCACGGATCCTTGGGCTATGTTTCCCCTATCCGATTTGAGGAAAATTATTACAAGAACCTAAAGAGAATGGCTTAAAATTGTGTCCACTTTTT # Right flank : GTGGCAGTGGCGCTCCCATCTCCGCTGCCATCTCAACAAAAGACTTTCCGATCATAACCGCAGCGCGGTCCGTTCGGAAAGTCTATTGTTGCCGGTGCGGCGGCTTCTCTCAATCTCCCAGCATCTGCTCCGCAGCCGCCTTCGCCATCTCGACGCAGTCGGGCAAGCCGACGCCGTCGAACGGCGCTCCGGTCGCGTATATACCCGGCAAGCGCTCGGCCAGCTCATGCCGGAGCGCGGCGATCCGGTCCGTATGGCCGACCGGATACTGCGGCATCGAGCGGCGCAAGCGCGTGATCTCGATGAACTCCGGCTCGGCCGTCAGCCCCATCAGTTCGCGCAGGTCTCGCTTCACCGCTGCCGTCAGCTCTTCGTCGGACAAGTCGAGCGCGGAAGCATCGGTGGAATGGCCGACATAGCAGCGGATGAGCCGCTTGCCCGCCGGCGCGGTGTTGCCCCATTTGGACGACGTCCACGTGCTCGCGGTGATCGCCCGGCCT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.08, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACAAGGCACTTTTTGTGCCTTG # Alternate repeat : GATCAAGGCACCTTTTGTGCCTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 12052-8140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJVN010000020.1 Cohnella lubricantis strain DSM 103658 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================== ================== 12051 33 100.0 36 ................................. GCGTCCAGACTCCCTGAAAAGGATGTCTCTCGGGCA 11982 33 100.0 36 ................................. GCGTCCAGACTCCCTGAAAAGGATGTCTCTCGGGCA 11913 33 100.0 34 ................................. CCAAGGACGATGCAGCAGCGCAGAACAAATTCAT 11846 33 100.0 35 ................................. GTACAACGACAATTCCTCCGGCCAGCTAGATGACC 11778 33 100.0 35 ................................. AACCCAACGACCTCGGAATCGCTCGTAATCACAAG 11710 33 100.0 35 ................................. ATTGAGGATTTGAAGTCTGCCGGTCAAAACATCGT 11642 33 100.0 36 ................................. GTCGAGCTCGGCAAGCAAATCCCCGGTTACGAACTC 11573 33 100.0 34 ................................. GATCACCGCTGCCGTCAATAAGGTCTCCAAATCA 11506 33 100.0 33 ................................. ATTTCATCCGAATCGTCTTCCGGATCCATGAGC 11440 33 100.0 33 ................................. CTATCGTCGCTTCCTCCGCAGGTGCAACAACTG 11374 33 100.0 35 ................................. CCCGGAACTGGCTTTTGTTGATTCCCCGCATAATA 11306 33 100.0 36 ................................. ACGAATTGATCGGTCACAGTGACCACATCAATTGGC 11237 33 100.0 33 ................................. CATACGATCTCGCCGCGCCTCTCCATAAGTTCA 11171 33 100.0 32 ................................. ATCAAAGAATGGCTGAATTGACGCGTAGGATC 11106 33 100.0 33 ................................. CGACTATGCCAAGCGATTACGATGACGGTCCAA 11040 33 100.0 36 ................................. TTGGCATTTGCGGCAATACTTCGGACCCTTTTTATG 10971 33 100.0 34 ................................. AGCACTTTATTTTTCCTTCTGTAACATTAGTTCC 10904 33 100.0 35 ................................. GCTTAGCTCTAATTCCGTGGGCTGATAGTTCCTCC 10836 33 100.0 36 ................................. ATGACCATCTGGATGCCATCCCCATCGAACGATTCG 10767 33 100.0 35 ................................. GATCAGAAGAAGGGCATAATGGGCCACACCATTAC 10699 33 100.0 34 ................................. AGCGTCGTAACCAGGCATCTTTGTGTCATAGAAG 10632 33 100.0 37 ................................. CAAATACAAGAATTGGGAATCATTCGCCAATGATGAT 10562 33 100.0 35 ................................. TTAACAAGGGCGTCGAAAGCTTGCGTCTCTGCTGC 10494 33 100.0 34 ................................. CTTGATATTAGGCGCGTATTCGGCTGTGATAGCA 10427 33 100.0 34 ................................. CCTGTGTAATCCGACATTAGCCCGCCCGCCCTTC 10360 33 100.0 33 ................................. TGATCCCTCCCTTCTAGATAAAAAGAGGGAAAG 10294 33 100.0 36 ................................. ACGCCGGACTTCGCCGGAGCGACAACTTTAGCCATC 10225 33 100.0 37 ................................. CCTCATTACACCGAGGAGACGCGCAAAGATATTTTAA 10155 33 100.0 36 ................................. ATATTAGCCATGCCATGCAGAGCATCCATGACGTCC 10086 33 100.0 37 ................................. ACGAAGCAAGCGAGCTATTTGGATCAAGATGTTACGA 10016 33 100.0 35 ................................. CCCAAGCTCTCTAAGCGCTCTCCTTGGATGCCGTC 9948 33 100.0 36 ................................. CAGAGTGCGCTGGGGATTGCAAGCTTCGGCTTCCCA 9879 33 100.0 37 ................................. GCAAAACAGAAGAAACTCTGTCACCTTGTATTGTCAA 9809 33 100.0 36 ................................. GACTCGAGCTACTATTTTCTCTGCCTCACGGCACTC 9740 33 100.0 35 ................................. CGTATCTTCGCGCTGTCGCGGTCCACGCTTACTAT 9672 33 100.0 34 ................................. ATTATTTCGTCGAGCGATGAAGTCATTAGCAAGG 9605 33 100.0 34 ................................. CGGGATCACCTGTCCATCCAGAAACGCCGACATA 9538 33 100.0 35 ................................. TCGGCACGATGGACAATAGTAAGCACGAGGGCCGC 9470 33 100.0 35 ................................. GTGATATGGATGGAGTTATCGCAAACCTTCATAAT 9402 33 100.0 39 ................................. TGCTTAGACTCCCCGTAAATGGGATGCTTGTCAGTGGAA 9330 33 100.0 35 ................................. CCCTTGTATTCGGTGTAAAAAAACATATAATAAAC 9262 33 100.0 33 ................................. CTTTCGCCGCCGCATTGTTCGCGACGCGGAAGC 9196 33 100.0 34 ................................. CGGAACCATATTTGTGGAAGAGTGAACCACCTCA 9129 33 100.0 35 ................................. CTGTCACTTCCTGCAATACTTGGGCTTCCGGCCGC 9061 33 100.0 36 ................................. CTTAATCCTTCATGTAGAAGCCACACTCGAACCCCG 8992 33 100.0 34 ................................. ATCTTGACCGGCACCGTTCGGTCGATTCGCTCCG 8925 33 100.0 33 ................................. CACGCTGACGGCGATCGATCTGCTGCTAAATGA 8859 33 100.0 35 ................................. TCATCGCCGCCGTCGATAGCTTGCGGCTCGAAGAT 8791 33 100.0 36 ................................. GATGCGATCCACGAACGGGCTAATGAGATCATGGTT 8722 33 100.0 33 ................................. TCCTCTCATGGGTTGGCTGAATTAAACGGTAAA 8656 33 100.0 35 ................................. TTCGCATTCAATACCAGTCCAATGACCCAGACCAA 8588 33 100.0 37 ................................. TCGACACGAGCTTGCGTGTCGTACGCGACGATACGCG 8518 33 100.0 35 ................................. GCCAAAAGTGGATTGTCAACGAGTAATTCGCTTTT 8450 33 97.0 33 ..............A.................. CTCAGGCGCCAGGCAATCGAAACATCGCTCGAA 8384 33 97.0 43 ...................A............. CACCCGCAGCTCGGCGGCTTTGACCGGATCTCGAACCGCTTGA 8308 33 100.0 36 ................................. CCAGCCCCTAACTTCCAGGAAGCCGTAGTACCAGCG 8239 33 100.0 33 ................................. CAGTTATAGCATTGATGCTGTTGCTATTGTGTC G [8222] 8172 33 90.9 0 ..........A..A.A................. | ========== ====== ====== ====== ================================= =========================================== ================== 58 33 99.7 35 GTCGCATCCCGTACGGGATGCGTGGATTGAAAT # Left flank : GGAAGTAGGTGTTCGAGATGCTAGTGTTGATCGCGTACGATGTAAGTACTGTCAACGCAGCCGGGCAGCGAAGGCTGCGACAAGTGGCTAAGGCGTGCCTAGCTTATGGTCAAAGAGTGCAGAATTCTGTGTTCGAATGTGTGGTGGACGCTACCCAATTCGCTGCGCTAAAGTTGAGGCTGATTGAATTGATCGATGAGGAACAAGATAGTCTTCGGTTTTATCAGTTAGGCAACAACTACAAGAGTAAAGTGGAGCACATTGGAGTGAAAGCATCGTTTGACCTGGAAGAGCCATTAATCTTGTAGGGAGAATCGGTGCGGAACCGGAGTGCGAATATGGAGTGAACATGGTTTAGTAGGGAGTTCCGCACCGGATAAATGGAAGAAATAGGTTGGGTTTAGCTTTACAGTAGGTATTTAAGTGACGAATAGAATGTAATTGTTGCCGATTTGCGATTGGTTGGGTATGTTGTTATGTCAAATCGATTGAAAATCGCT # Right flank : AAGCTATTGTCTGTGGACGGAGAATTTCAGTCGTCCTCACACATTCTTCCAGATCAATTTCACACCGCCCTAACCCCTTGCCGCTGGCGACCTCTTATTCTTTAGTCCCAAGCCAAATTAGCCCCATTATCCCAATGATTAACACCGTTAATCTGTGCATTCCGTCTCATGGCATTCGACACCAGTCCCCCTATAATGAACGGTAGCAGGGTATTCCTGCCGTACCATCCAACTATAGGAGGACGAGGATATGAGAAAGAAATTGCAGATTGCACTTGCCGCATCGATGTTAATCGCCGCCGTTCCTGTTACTGCGAATGCCGCCGTTCAGGAAGGTTCGGCCCAAGTCGTATCCTCCGTCAGTTTCCGAACAGCGCCAACTACCTCATCAGATGTCATGCGTTATTTGAAGAAAGGCGAGTCGGTCTCCGTTCTGGAGGAGACGAACAGCTACTGGCTGCAAGTGCGCGACGCCTCCGGACAGATCGGCTACATATCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //