Array 1 96213-95634 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJU01000105.1 Escherichia coli strain HH-NP007 sequence105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96212 29 100.0 32 ............................. GCCGCCTGCATTAACGATAACGTAACAAAGGA 96151 29 100.0 32 ............................. GATTACAATCCAAAGGGTCATTGAATGTTGTT 96090 29 100.0 32 ............................. GACTCGGGCGGAAAATATTCACCGAACGCTGG 96029 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 95968 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 95907 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 95845 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95784 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 95723 29 100.0 32 ............................. TTCCAGCAGTTCAGCGTAACACCGACGGTCAC 95662 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123836-121916 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJU01000105.1 Escherichia coli strain HH-NP007 sequence105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123835 29 100.0 32 ............................. ACATCTGGCCGTATTTATACAGGCTGGATGAA 123774 29 96.6 32 ............................T GGTTATATTTTCATCGTAGCTAATGGGTTTAA 123713 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 123652 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 123591 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 123530 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 123469 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 123408 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 123347 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 123286 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 123225 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 123164 29 100.0 32 ............................. TTCCTGACACAATCCCCTATCACGTCGCCACA 123103 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 123042 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCATG 122981 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 122920 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 122859 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 122798 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 122737 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 122676 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 122615 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 122554 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 122493 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 122432 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 122371 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 122310 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 122249 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 122188 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 122127 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 122066 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 122005 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 121944 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTTTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCTACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //