Array 1 16472-15101 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXED01000002.1 Salmonella enterica strain BCW_2244 NODE_2_length_438541_cov_3.18202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16471 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16410 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16349 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16288 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16227 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16166 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16105 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16044 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15983 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15922 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15861 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15800 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15739 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15678 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15616 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15555 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15494 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15433 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15372 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15311 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15250 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15189 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15128 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1047-2828 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXED01000018.1 Salmonella enterica strain BCW_2244 NODE_18_length_109120_cov_3.15778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1047 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1108 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1169 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1230 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1291 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1353 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1414 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1475 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1536 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1597 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1658 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1719 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1780 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1841 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1902 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1963 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2024 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2085 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2147 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2250 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2311 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2372 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2433 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2494 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2555 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2616 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2677 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2738 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2799 29 96.6 0 A............................ | A [2825] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //