Array 1 1-1463 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFU01000126.1 Acinetobacter baumannii strain ABBL067i contig-2000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 121 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 181 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 241 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 301 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 361 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 421 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 481 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 541 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 601 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 661 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 721 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 781 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 841 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 901 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 961 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1021 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1081 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1141 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1201 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1261 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1316 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1376 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1437 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5013-9543 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFU01000237.1 Acinetobacter baumannii strain ABBL067i contig-3000066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5013 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 5073 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 5133 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 5193 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 5253 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 5313 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 5373 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 5433 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 5493 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 5553 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 5613 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 5673 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 5733 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 5793 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 5853 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 5913 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 5973 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 6035 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 6095 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 6155 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 6215 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 6275 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 6335 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 6395 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 6455 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 6515 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 6575 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 6635 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 6695 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 6755 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 6815 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 6875 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 6935 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 6995 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 7055 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 7115 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 7175 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 7235 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 7295 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 7355 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 7415 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 7475 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 7535 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 7595 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 7655 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 7715 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 7775 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 7835 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 7895 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 7955 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 8015 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 8075 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 8135 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 8195 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 8255 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 8315 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 8375 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 8435 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 8495 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 8555 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 8615 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 8675 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 8735 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 8795 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 8855 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 8915 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 8975 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 9035 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 9095 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 9155 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 9215 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 9275 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 9335 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 9395 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 9455 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 9515 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //