Array 1 43-315 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000240.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_240_length_375_cov_2.57468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 104 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 165 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 226 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 287 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGCCTAATGGTGATGGGGCGTTTAATCTTATCTCG # Right flank : TCCTGTCGGCGGTACGGTGGACATCCCGCAGGGTGTTCCCCACGAGATCGGAAGAGCACA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000101.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_101_length_14573_cov_4.34207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 111 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 50 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTCCTGCGCTTTGGCCAGTTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000254.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_254_length_281_cov_2.80841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 96 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 157 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 219 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGATGCCGATAGCGGTCAGTAATGAAAATGGCG # Right flank : CCCACGCGCGGCCGCACTGGCCTCGCGGATAAGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 212-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000269.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_269_length_219_cov_2.21711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 150 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 89 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 28 28 89.7 0 ..........................AG- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCAG # Right flank : G # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99977-99826 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_7_length_99991_cov_4.7305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99976 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 99915 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 99854 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTATTGGCATCAT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18-1753 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000084.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_84_length_19727_cov_4.01139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 79 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 140 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 201 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 262 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 323 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 384 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 445 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 506 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 567 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 628 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 689 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 750 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 811 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 872 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 933 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 994 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 1055 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 1116 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 1177 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 1238 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 1299 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 1360 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 1421 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1482 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1543 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1604 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1665 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1726 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGGTACACCATACCTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18299-19727 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVX01000084.1 Salmonella enterica subsp. enterica serovar Senftenberg strain BCW_2893 NODE_84_length_19727_cov_4.01139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18299 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 18360 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 18421 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 18482 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 18543 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 18604 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 18665 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 18726 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 18787 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 18848 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 18909 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 18970 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 19031 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 19092 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 19153 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 19214 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 19275 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 19336 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 19397 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 19458 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 19519 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 19580 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 19641 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGCC 19702 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //