Array 1 25885-28475 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLP01000015.1 Escherichia coli strain MOD1-EC6613 MOD1-EC6613_15_length_122100_cov_32.8495, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25885 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25946 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 26007 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 26068 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 26129 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 26190 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26251 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26312 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26373 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26434 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26495 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26556 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26617 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26678 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26739 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 26800 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 26861 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 26922 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26983 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 27044 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27105 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27166 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27227 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27288 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27349 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27410 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27471 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27532 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27593 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27654 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27715 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27776 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27837 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27898 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27959 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 28020 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 28081 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28142 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28203 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28264 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28325 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28386 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28447 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 542599-543726 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLP01000002.1 Escherichia coli strain MOD1-EC6613 MOD1-EC6613_2_length_543928_cov_34.5611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 542599 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 542660 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 542721 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 542782 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 542843 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 542904 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 542965 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 543026 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 543087 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 543148 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 543209 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 543270 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 543332 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 543393 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 543454 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 543515 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 543576 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 543637 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 543698 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //