Array 1 232011-233196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMT01000004.1 Salmonella enterica subsp. enterica serovar Newport str. CVM24403 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232011 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 232072 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 232133 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232194 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232255 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232316 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232377 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232438 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232499 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232560 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232621 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232682 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232743 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232804 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232865 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232926 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232987 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 233048 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 233109 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 233169 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249866-251298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMT01000004.1 Salmonella enterica subsp. enterica serovar Newport str. CVM24403 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249866 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249927 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249988 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 250049 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 250110 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250171 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250232 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250293 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250354 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250415 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250476 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250537 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250598 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250659 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCTC 250720 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250781 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250842 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 250903 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 250964 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251025 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251086 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251147 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251208 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251269 29 100.0 0 ............................. | A [251296] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //