Array 1 47541-47774 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPN01000094.1 Clostridium sp. MCC353 NODE_128_length_133192_cov_46.562519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 47541 33 100.0 34 ................................. TTTTTATCAGATTCTCTTTTCGCCTTTTCTCTAC 47608 33 100.0 33 ................................. AGCAAATGAAAGCACCTGCCCATGTGTTATATT 47674 33 97.0 35 .................C............... CCAAATACTGGATAATAACTGTACTACCTCGTTTT 47742 33 90.9 0 ...........C.....C....A.......... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 97.0 34 GTCACAGCCTGTGAGGGTTGTGTGGGTTGAAAT # Left flank : TTAAACCTGACGGCGGCCGGGGTGGTGATCCACTATGATCCGTGGTGGAATATGGCCGCCCAGAACCAGGCCACGGACCGTGCCCACAGGATCGGGCAGAAACAGGTGGTTACCGTTTATAAGCTGATCATGAAAGGGACATTGGAAGAGAAGATATTGGAGATGCAGGAGAGAAAGGCTGGGCTTTCTGAGGATATTATGGCGGAAGGGAGTATTGGCGGCGGAATGGCTGGGAAGGAGGAACTTATGGAGTTGTTGGGAGGTGTGACGGGAGGAATGGGGGAATAGATTGGAGAGAGGAATTAGGGGGAGTGGATTTTGAGGAAGGGGCGGGATTTTGGTGCGAATTGTAAGTGCACATGAAAAGCCTGGGGGATTCGCATCTGGAAAGTATGGGGAGATGTGGTGGTAAGAGGGGGGAAGATTGACTTTGGGGAGAGAGATTGTATAATATATATAATAGTGGAGGTGGGATGAGGGGGGAATTGGGTATAATTGTT # Right flank : TATATCCTCTATAAGAATTTGCCCCACCTCTTGGAGTCATAGCCTTCTAAGGCTATGGATATTAAAACTGTAATATGTATTTGGTGTAGATTATGATGTTAAGATTTGTTAAATAACGGCATACTTTTAACGGATATATAAAATAAAAGCACCAAAGATTGTATAAAAAAGGTAATCCATTATGCTAAAATCATGATATTGTAAAATTACAGGCACCTTATGGAAGTTAAAAGAGAAATTATTGATGCAAATAGTCAAATAAAAGTTATACAATTTCCAAATTAATTAATGGATAGAAAATTAGTGACTAGTGTATTGTAAGCTAATAATAATCAGGAGGAGATGATTCCCCAAAAGAATATCTGATTCGGGTCATTCAGAGATTACTCAATCTTCAATTGGAAGTAATTTAAAGATCGGTTTTCGTTTAGCTTTTCATAAATAATATTTATTAAAGAGGAGACCAATTACGGAAAGTCAGTAGGAAAAGCAGGAGATAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGTGAGGGTTGTGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 57735-58237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPN01000094.1 Clostridium sp. MCC353 NODE_128_length_133192_cov_46.562519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 57735 33 100.0 35 ................................. ATTTCACTTTCGATCCTCTGTTCATGGCGAACTGA 57803 33 100.0 34 ................................. TAGCATTCTCATACCTAGATATATCTGCAGTAAA 57870 33 100.0 35 ................................. CTGTCAGTCCATTATCAATGTAAATATCGACAAGT 57938 33 100.0 33 ................................. CTTTATCAGATACGCGGCAAGGTCTTTATATTG 58004 33 100.0 35 ................................. ATATCGGCTATACCAGAGTCCAAATCCGTATACCA 58072 33 100.0 34 ................................. ATCTGCGCTCATAACACAAGCGTTTCCACCAGAC 58139 33 100.0 33 ................................. GTTAAGTATGTTTTTGTCAGACACTTTAACAGC 58205 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCACAGTCTGCGAAGGCTGTGTGGGTTGAAAT # Left flank : TTGAGATTTTTCGATATATTTCCAAATAGGTTCGAAATAGGGCTGGATGTCCAGGCGGTTCACTATAAGGATTATTATGGTAATTCCACTATTCCGCCTACGGATGATCAGATAACAATGCCTGTATTCTTTATGTGTTTGAGAAAGGCAGAGTTTAATATCTTTATTTGCTGCCGTGACGAGAAGGTGTGGAATGGGTGTAAGGGAGAACTTGGCTGTATGATGGATAAAGTGTATAAAATATATGGAATTGGGGCGAAAACTGCATTGGGGTATGGGATTGTAAAGGGATAGGAGGTTGAAAGCTGGGTCTTTAAAAATGGATACAGCAATTTTGGTGCGAATCGTAAGTGCACATGAAAAGCCTGGGGGATTCGCACCTGGAAAACATGGGGGAGAGAGGGGAAAAGAGGGAATGGAGATTGACTTGGGGAGGTGGGGATTGTATATTATATATATAATAATGGGGATAAAATAGGATGGATTTGTGTATAATTGCT # Right flank : TTGTAATATGCGTATGACAGGCGTCATGAAGATATTATTCGACATACTACAATTTGAATTAATAGAATCACTTACAAATGATTGACAATGTAAACCAAATCTAGTATAATATACTATATAAGGAGAGTGATCATATGGCTACAGTACCAACTCAAATCAGAATAGATGAAGAACTAAAAAAACAGGCGGTAGATTTGTTTGCACAGCTTGGTTTAGATATGTCAAGTGCAATGAATATGTTTTTAAAACAGTGTGTTCTTCGTGGTGGTCTTCCTTTCAATGTTGAATTGCCGAATTACAAAGCTGATGTAATAGAGGCTATGGAGGAAGCAAAACGTATCAGTAAAGATCCAAATGCAAAAAAATATAATAGTTTTTCAGAAGCCTTAGAGGATATGGATCTATGAGCTATCAATTAATATTGACAAATAAATTTAAAAAAGGACTTAAATTAGCCAAGAGGCGAGGACTTGACATAACATTATTAGAAACATTGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAAGGCTGTGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6621-6926 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPN01000115.1 Clostridium sp. MCC353 NODE_156_length_29005_cov_48.356110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 6621 33 100.0 37 ................................. TGATATGGATAGATTATACCATATCAAGAGTGTAAAG 6691 33 100.0 33 ................................. ATTTAATGCTCCGCATATACGATCTATTTCTTT 6757 33 97.0 36 .........................A....... ATGTATAATAAGTTTTATCATTCTTGGCCTGTTAAT 6826 33 81.8 35 A..........T.....T...T.AA........ GCAGATCGGCCATATACAGACAAAAAATGGTAGGA 6894 33 72.7 0 T................AGAAA..TA...T... | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 90.3 36 GTCACAGCCTGCGAGGGCTGTGTGGGTTGAAAT # Left flank : GAATGAAAAGCCCCAGTTTGCCCAGAAGGATTTACATATCCGAAGTGTCCGGGTTTTGGGCAGGAACCGGAATGCGGTGAAGCTCTGCCTCGTAACGGATCAGGGAACTGTGATGGATGCCATGCTGTTCACAGACGGAGATGAGTTTACGGCCAGACAGGTGGGGCATAGGATGATGGATATTATCTATTATCCGACGGTTAATGAGTATAATGGGAGACGGAGTCTGCAGGTGACGATTAAGGATTATAAACTGCATTAGATTCTTTTTGGGATTTTGGCGGAGGGAACGCGGGGAAGGGAATTCTGGGAGGAATGTGTGTGGATGGGGGATTTTGGTGCGAATTATAAGTGTACATGAAAAACCCGGGGGATTCGCACCTGAAATGTGGAGACGGATGGTGCGGAATGGTGGGAGAAGGTTGACTTTGGGGTAAGGAGTTGTATATATTATATATATAATGGTGGGAGAAGAGTGGGGGGATTTGTGTATAATTGCT # Right flank : TTGTAATATGTATTTGATGTAGATTATGATGACAAGATTTGATAAATAACGACATATTTCTAATATTACAGTGAACATTCGTATTTCACCAGAAAATATAAATAAAAAGGCTTGTTAAGAACAATAGTGCTCGAATCCTACATTAGTGATTGATATTTGTCCGTAATAAAAAATATATATTATGGAACTCAATGTAGTAAAAGAACGTATCAAAATCCATTTCAGCCATCTGCGCGTCCCACTTTGCAGCATGTTTACCTCGAATTCAAGTTACATAGCCTGCTATTTCTTCTCATTCGGGACAAATCCCACATAGACTTTGATGTATATCTGACGAAAAGCAATTTTCAAACACATTTTAGTGTTCCATTTACAGTTGAAAGCCAAATCCCTGATATTTTCTGTTCCTTCCTGGCTGTGCTGCTACTGGCTCATGGAAAAAAATTAATAATGAGTATAACTGAATAAGGGCAAAATGTGATAAAAAATATACGAAAAGT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68494-69315 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPN01000022.1 Clostridium sp. MCC353 NODE_22_length_154312_cov_45.523891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 68494 32 100.0 34 ................................ AACCTTATCTATGTCACACTTTATTTCATCATAG 68560 32 100.0 34 ................................ GGAGTTTAAAGATTTATTAACCGGGGCCAATATT 68626 32 100.0 33 ................................ TGCCAGTGCTTCGATGCCTGTGACCTTTACCAT 68691 32 100.0 34 ................................ AGCGAATGTACCCGGAACTGATGAAACTACGAGC 68757 32 100.0 34 ................................ TTACAAATCTTAGGTCAATTAAAGACTTTACGCC 68823 32 100.0 34 ................................ TTTTATGGTTTTCAAATCAGGTATTGCTTCCACA 68889 32 100.0 34 ................................ GCATCACCATACACACAGGAGTCCCCTCCGATTA 68955 32 100.0 35 ................................ CCTAAGGCGGTCCATATTTGCACTATCGTTGTTCT 69022 32 100.0 33 ................................ GCCAGGGCCTCCACCTGCTTTTTGCTGTATTTA 69087 32 100.0 34 ................................ ATGTCATACTCGAACTTTTCCCGATTTAGTATGC 69153 32 100.0 33 ................................ TTTGTAATATAAGCGGCTATCAACTACTATAAA 69218 32 100.0 34 ................................ TTCCGAGTATTTTAAATAACACTTAGCCCGTCCC 69284 32 87.5 0 ........T...............G..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 99.0 34 GTCACCACCCTTGCGGTGGTGTGGATTGAAAT # Left flank : GTTTTTCTGGAAATAGAGGGGGTTTTGAGGGAGGTTTCTATGCTGGTACTTATTACTTATGATGTGAATACCGAGACGGCAGCGGGAAAGACCAGGCTGCGAAAAGTGGCAAAACAATGTGTAAATTATGGAACCAGAGTACAGAATTCAGTATTTGAATGTATTCTTGATCCGGGCCAGTGTTTGATGTTAAAATCTATTTTAACAGATATTATTGATGAAAGTGTGGACAGCATCCGGTTTTATTATCTTGGGAATCAGAAGAAAGCGAAGGTTGAGCAGATTGGAATCGGAAAAGGTATTAACGTTGAGGAGCCGTTGATTTTTTAGATACATCCTGGTGCGAACCATAAGCGCACATAAAAATCCCGGGGGATTCGCACCTGGATTTGAAGGGGATTATGGTTTAGAGGGGGCGATTTGGGAGTGAAAATAGTTTGAAATGTTTTATTTTTGAATGTATTGCATAAAAATGAAAGTGATTTTTGTGCAATATTGCT # Right flank : TGTTCCATTACACCCGTCAATCAGATCTGTTTCACAGTCCCCAGTTTTACAGTAATGAAAACTAAGTCAAGGCTAAGTTTTTGTTTTATTCCTAAATACAGTGTCCTTACTGCCTTAAAGCATGCTATACTGAACCATTCACTCTTGTCTTATCCAACAAATTTTATACAGTGTTCTATTTTTGATTTACCAAACGTTTGAGTAAAAAGCAAAGAAATTTGCATTGGCCTGTGATAGAATAAGAATAATTATAGTATAGTGACAAATCAGTAGGAGGACATTATATGAATGTTAGAATTAACACGGAAAATGCCAAATCGTTTATTAATCAGGATGCATTAGAAGACAATGTAAAAAAGGGGTCTGAAATTGTCAAACTTCTTTACGAAGTCGAGGATCAGGAAAATGTTTTAGGTTGGCTTCATGCAGAAACCGCAGCAGTCCAGCTGGAACTGATTAAGGAAAAAGCAAAAGAAGTCCGTGAAAATGCGGACGTATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCTTGCGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //