Array 1 124036-123340 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJU01000002.1 Pediococcus acidilactici strain 175 NODE_2_length_318807_cov_20.0682_ID_4260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124035 36 100.0 30 .................................... AGGAATTAAATAATGGCAGATACAGCCCCA 123969 36 100.0 30 .................................... CAATACGTATCAACTACCACCGGTGCTATC 123903 36 100.0 30 .................................... TAACTTTACGCTGGGCTCCAGGAATCATTC 123837 36 100.0 30 .................................... CACTTGAAAAGTAAGAACTCTCTCTCATTT 123771 36 100.0 30 .................................... GAAGATAAGCAGTATTTTGATGAAACTATA 123705 36 100.0 30 .................................... TTTGACCCCAAAGTGCCCTCAAGCCTTGAT 123639 36 100.0 30 .................................... TTGTAACGGATGTTACTCCGCAGGAAGGAG 123573 36 100.0 30 .................................... CAATGTTGTTGTAATGATATGTGTTCTATA 123507 36 97.2 30 ..........A......................... GCATTTGAGCAGTGAATTCCCCACAATACG 123441 36 100.0 30 .................................... CCGCATTGACCATGGAATATCCCATTTCAA 123375 36 94.4 0 .................G................A. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.2 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAAGATTTAGTTATTCAAAAGTATTTAACTAAGATTGAACGGGTTTTTGCCGAAGGATTGGTGGATGGGCAACGTAACCAAATTCACGATCAGGTCAACCAACTATTTAATACGATTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTACTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCGTATGGTATAATTGAAGCGGTTTTGAAGATCCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCCAAATTGAAGAGCTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATCGAATTCACAGAAATGGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAATAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : TGACTGAAATTAATAAGAGTTAACGTTTTAAGGAAGTTATCAATAGTATTAGTAGTGAACTTTGAAGAATGGAATTTTAATGAAACTACTAGTTACGGAGAATGATAAACTACTAAGGTTCAAATGAATTTATAGGTTTAGCATTATTACTCGAAGACGACGTTTTAGTGGTGGTTGGAAATAAAATCCGCTCGAAACGATCGGGTGGTTTTCAGTTTGTAAAAGTATACCAATATATTGATATAGTAAATGCATAAAGTTAAGAAAGTGATAAAAACTGGATGATGAAGAATAAAAAGGCATCGCAATAAGCAAATGACAATAGTGACACTAATCATTCAGACGATTACAGATATTGTACAACTCATCACAATGCTTAAAAAATAGGTAAAAGAGGCGATACGTCTCTCTTCTGTTCATCAATTTTAAAATGGAGGCATTAAAATGAAAAACATAGAAAAACTACAATATTTAACTTTGACTATCAGTGTCGTTGCTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 190-951 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJU01000051.1 Pediococcus acidilactici strain 175 NODE_51_length_1004_cov_1.47635_ID_4364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 190 36 100.0 30 .................................... TTAATAAATATGGTATGTCCCCTGTCGCTT 256 36 100.0 30 .................................... TTAATTAAGAAAGTTACTGTTGAAGAAATT 322 36 100.0 30 .................................... CCAGCGACGCTGATGTCTTGGCATGGGAAT 388 36 100.0 30 .................................... GGACTAATGCGAACGAAATATCTCCGATTC 454 36 100.0 30 .................................... TAATCACTTTCAGTGTTATCTAATTCCAAC 520 36 100.0 30 .................................... TCGATAAGCACGATACTGAGCTAACCAGTC 586 36 100.0 30 .................................... GTAGGGTAACTGATGTTAGTAGCGTTATTT 652 36 100.0 30 .................................... CATTCGTTTGGCTATGTTTTCAGAATTTCT 718 36 100.0 30 .................................... TTGTTGACGCAGCCATATTTTTAAACCAGA 784 36 100.0 30 .................................... TACTATTCACTGCATCCCTACTGCAATACT 850 36 100.0 30 .................................... TTGCAAAGAGACAAAAAGCCTACAACCATG 916 36 94.4 0 .................G................A. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : ATTATTTGACAGCGACCCAAATTGAAGAGCTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATCGAATTCACAGAAATAGGTAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACGG # Right flank : TGACTGAAATTAATAAGAGTTAACGTTTTAAGGAAGTTATCAATAGTATTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //