Array 1 229166-230576 **** Predicted by CRISPRDetect 2.4 *** >NZ_UTHQ01000144.1 Pseudomonas viridiflava isolate p13.F5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 229166 28 100.0 32 ............................ ACCGAAACCACCACCTCCGGCAGATGTAAATC 229226 28 100.0 33 ............................ GCCATAGAAAAATTCTGCGCGGCTATTCATGTA 229287 28 100.0 32 ............................ ACGCGAGCACCAGAACCGGCAAAGGTCATCGG 229347 28 100.0 32 ............................ AATCATCAGAAATGCAGCAAGGCCCGGCAGGC 229407 28 100.0 32 ............................ CCGACAATTGAAGAGGTGGCGTTCGACTGGGG 229467 28 100.0 32 ............................ TGCCTCGTCCGCGTCTGCCCCGGCGTCTTCAC 229527 28 100.0 32 ............................ GCCGCCTGCATTACCTTTTTCATCTTCATCAC 229587 28 100.0 32 ............................ TTCGGGCAACTCCTGCCAACCTTTAACATGAT 229647 28 100.0 32 ............................ ATGGTCAGGCCGTGGCGCGCCAGCATCTTTTC 229707 28 100.0 32 ............................ AGAACCGGCAAAGGTAATCGGCTCGCGCTCGG 229767 28 100.0 32 ............................ ACGATCGATGCTACGGTCACCCCCATGGCCAG 229827 28 100.0 32 ............................ CGGATCTGTTCGCCGGAAGCACCGGCGCCGGA 229887 28 100.0 32 ............................ TTTTGGGCGTTATCGCTCATTGCTCGCCCGCC 229947 28 100.0 32 ............................ AGCGGTATGACCCGGCGAATGACTGGGCTACT 230007 28 100.0 32 ............................ AGGACAAACTCGATCGGATCTTCCAGGGTAGT 230067 28 100.0 32 ............................ AGGATGAACCCCCAGTTGCAGTTGCTAGCTCA 230127 28 100.0 32 ............................ TGTTCCTGCCCGAACTCTGATTCCGTCAGACG 230187 28 100.0 32 ............................ TGAGCTATGCCTCCTGGCTGACGATCCCTCGC 230247 28 100.0 33 ............................ GCAACTCATTAGATGTTTTGCCTTCGCCTGGAA 230308 28 100.0 32 ............................ TGAGTGGGTCAAACAGCTTGCCCGGCATCGTC 230368 28 100.0 32 ............................ AACTGCAGGCAATGGTTTCGGATCGGTCCACA 230428 28 100.0 32 ............................ TCATGCGGATAATCATCCAACTGAGGACACCC 230488 28 96.4 33 ...............C............ ATGAAGTCGCAGCGAGCAGGGCCGCAAGCAAAA 230549 28 71.4 0 ..C........C.C.....A..T..GGT | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GTTTGACGTCGTAACGCACCCCGGTGACCTTTACACCCTGTGCGCGGCACGGCTCGCTTGAGCACAGAAATTCGAAGCGGGTGCGGGGTGGTTCCTGTGAAAAGTATTCACGCCGCGCAGCGACAATCGACAGCTCCTGCTGCAGTTCGACACAAAAGGCGCGGGTGATGGGCTTTGTGGGTTTCATACGATACATCCCTGATGCCGTGTGCGTTGACAGCTTACTGGTTCTCGATATGGGACAAGTGATTTCAAGAGATGATGCATTGAGAGCGAGGGGAGGATAGGCGTTTGATTGCCGGTGCCTGTATCAGGCGTCTTGGGCCTCTGGAGTGAGTGGGTTGGTCAACGGCATTTTTGGCGGGTAAGACCCTCTTTTTTGGGATAAAAGCTTGGCCCATATAAATCAAAGGGTTAGGCGTGTAACAGAAAAAAGGGTTAATTAGATGAAAAGGAGTATTTTTTCTTTTAAAACGAGAGGTTGTCGAGCAAAGTGTCTA # Right flank : TGTGCCGACCGGATGAAGGTGGCAGCGTATGAAGCAATATTCATACACCGCCCCATCCTTTACTGAATCACACCACATGCCGCACGATCGCCGCCACCGCCCAAGGGTTTGGGGTGGTCCGAGTGGTTATCGCCGCCTGCATGAATCATCAGTGCGTGTCCCTTGATTTGCGAGAGCTCTTTAATGCGGGGTGCCAGCACCGGGTAGTCGGCCGTGCCGTCTGCGTTCACGTAGATTGCCGGCAAGTCGCCCAAGTGGCCGTCCTTGTCATAAGGTCCCAGATGCTTTCCGGTCTTCTCTGGATCGAAGTGACCGCCTGCCGCCAGCGCGGCAACTTTGGCGCCGTCTTTAGTGCCAGCATCGCAACTGCCATTTTCGTGCACGTGAAAGCCATGCACTCCAGGCGGCAGCCCGGTCAGTTTTGGCGTGAAAACCAAGCCATAAGCCGTTTCTTCGATATTGACGCTACCAATCGATTTCGGCGCTCCGTCGGCACTGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 233635-232163 **** Predicted by CRISPRDetect 2.4 *** >NZ_UTHQ01000144.1 Pseudomonas viridiflava isolate p13.F5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233634 28 100.0 32 ............................ CGCTGGACCCCAAACTTGTGGCTGAGTCATGC 233574 28 100.0 32 ............................ TGGTCGTTTTCCCCGATCGGGGTAGACCTTTG 233514 28 100.0 32 ............................ GCCCGGGCGCGCTCTGCCTTGCTCGGCTTGTC 233454 28 100.0 32 ............................ AGGTTTCGATGCCGCCTTTTTCCATCCAAGGT 233394 28 100.0 32 ............................ CACTCGATACACCGAGCAATTATCCAGCGCGT 233334 28 100.0 32 ............................ TCCAGGGCCGCTAGTACCACCTCCACCACCGC 233274 28 100.0 32 ............................ GAGTTGCAGCAAGGCGTCACGCTCGGACAGCC 233214 28 100.0 33 ............................ ACGCTGCGCGCCTGCCCGATAAGCGTGCTGAAC 233153 28 100.0 32 ............................ CAAGATCCCACGGCAACCACAGCGCCTGCTCG 233093 28 100.0 32 ............................ TCGATTTCGGCTTCAAGATTGCCGGTGATAAC 233033 28 100.0 32 ............................ CTCAAACACGGCGAGTTCCATCAGATCACGGA 232973 28 100.0 32 ............................ GGTGAGAGACGACGAATGAAACACGACTTCCG 232913 28 100.0 32 ............................ ATCGAGAAGGCGCAAAGCCAGTTATATAGGGG 232853 28 100.0 32 ............................ TCTGTGCGTGGCCTAACCTCAAGCGGTGGAAT 232793 28 100.0 33 ............................ ATCGATCCGCTTCGACTCTGCCGTCAGTGTCTT 232732 28 100.0 32 ............................ ATAACCTTGGCAGCTCGGCTTCGGATCTGGAG 232672 28 100.0 32 ............................ ACACAGGAGCGTCCAGCGCGGCCACCACGGCC 232612 28 100.0 32 ............................ AGTCTGTGAGGGTGATGTTTTCTCATGCGCCA 232552 28 100.0 32 ............................ AAAGACAAGGCAATGGCAAAACCAATGATTAC 232492 28 96.4 32 ...............T............ GCTGAGAATGCGTGCAGCGCTTAAATAAGCAG 232432 28 100.0 32 ............................ TCACCAACGGTCTGCCAGCCGTCGACCGTGGC 232372 28 96.4 32 ..........................G. GCTCCCGGCCGGCACAGCCGCGGCACTGGCGC A [232368] 232311 28 100.0 32 ............................ ATGCTGCTGGGGATATGGCTGTTGATCTTGTC 232251 28 92.9 33 ............AC.............. GGTGTTGAGCGGCACGGTCACACACTGATGCGA 232190 28 89.3 0 ................A.....T.A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCACTCGATACCCTGCTGGCGCTGAACTGGCTTACGGGGATGCGCGATCATGTGCGGCTGGGCGATCTGAGCAGCGTCCCGCCTGATACTCGCTACCGCGTTGTCAGCCGCGTGCAAACAGACAGCAGCCCTGAGCGCACGCGGCGTCGCCTGATCAAGCGTCATGGCATCACAGAAGAACAGGCCCGCGAGCGCATTCCAGACCATGCGGCCAAGCGTTGTAACCTGCCCTTTGCACAACTGCGCAGCCAGACCACCGGCCAGCATTTTCGCCTGTTCATTCGGCATGGGCCGTTGCTGGACAAGCCTGAACATGGAGCTTTCAACGGCTTCGGCCTGAGCAGCCGTGCAACCGTTCCCTGGTTCTGACCCTCTTTTTCGTAAAGCAAAAGGCCGCTTGTGAAATCAAGGTGTTACGAGCGGTCTTGGAAAAAGGGTTTGAGATGGGTAAGTAGGTATTTTGTTTTTGAAACAAAGCGTTATGAGGGAAAGGCTCTA # Right flank : TAGAGTTACAGCGTAGCTGCAATGCAGCTCCTTTACTGCCGCACGGGCAGCTTTTACTTGCGTCATCCCATCCTTTCATTCTGTACAGACCGCATTAGAGAGGCTACGCGTACAACTCCTCTAGAGCTGTGAGCTCTTGCTCAATAACACTCAGCAAAGCCTCCCATTGTGCTTGAGTACATTGCTGTCCCCCTTTGGCACTGTAAAGAAAATCGACAATTCCTGAGCTGACTCGATCTTTATTGGTCTTCTCGAAAATCTGACGAGTCAATGCATGGACAAGCATATCCAGCTCAGATGCATAATTGATCCACCGCCAGTTGTGCCTCAACACGACTTTATCAATCAGCATGCACTGTTTCCTGAATGCTCGTATGGCCAGGCCTAGAGAGCTGGTACTGAGCTGGGCATTGAGCCGCTCACTGTCAGAGCCCGCTCTTTGTTCCGCATCAGGACCAAAAAACCACTCGCTGAAACCAATTTCGATCTCACGAAAGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 242722-243760 **** Predicted by CRISPRDetect 2.4 *** >NZ_UTHQ01000144.1 Pseudomonas viridiflava isolate p13.F5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 242722 28 100.0 32 ............................ TGCGACCTAAAGGTCTACCCCGAGTTGCTGCA 242782 28 100.0 32 ............................ GACGTGGACGCCTATCACTCGTTCACCCGCCT 242842 28 100.0 32 ............................ GTCGTCTGTACTCGGTCAAACTGGTGAGTAAA 242902 28 100.0 32 ............................ AATGCAAAAACCGCCGGGCAAAGCCGGCGGTA 242962 28 100.0 32 ............................ ATTTGGGCATATCGTAAACCGGGCATAAGTTC 243022 28 100.0 32 ............................ TGCCGCGCCATCGTAGCCGCGAAACTGGGCAA 243082 28 100.0 32 ............................ TCGGCCGTGTCGCGGTACGCCTGCGTGAACTC 243142 28 100.0 33 ............................ AGTTGGATCCGGTCTGCCATTTCCTCGTACTTC 243203 28 100.0 32 ............................ AGTGAGGTCGGTCGGGCGCAACGTGAGGCTGA 243263 28 100.0 32 ............................ ACGCTCGGCGCCGAACTGGACCAGGTCACGTT 243323 28 100.0 32 ............................ ATAAAAAAGGCCGCCCCGGCGGCGTTGTACCG 243383 28 100.0 32 ............................ GCCAAGTTCGCCGAGGAAAACCGGGCAGAACT 243443 28 100.0 32 ............................ TGTATGCGGCCACGAATGGGGAGTCTGTTGCG 243503 28 96.4 23 ....C....................... AGGCGACGCAAGTGGCGGGCACG Deletion [243554] 243554 28 100.0 32 ............................ CTGACACTGAAAAAGGCAGCCAGTACAAACAC 243614 28 92.9 32 ...........C.C.............. GGTTACCCACTGGTGACCAGCGAAGCCCTGAC 243674 28 89.3 31 ...T...T..............T..... AGATCCTGTGCTTCTGGAGTGAATCGCCCCT 243733 28 78.6 0 T..G.......CA.G...T......... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCAAAACCCAACCAGTACACCGGCCTTGGCCAGCTCACGCATGGCGGCCTGAGTCACGGAGGTTCCCGTGCCCAGCAAGACGGTTGTGGTATTGGCAATGGGGATATTCCAATACAGCGACTGTTTGCCTGCATCGGTCACATACTCGACCCGTCCCCCGTTGACCAGCACACGGCAATGCTGCAGGTAATAGATATTGGCGCGCTTGGAATGCAGGATCGTTTTGAGATCCGAGGCTTTGATGTCGTCCATGAGTCATCACTGCTCTTGTAGATAGTCCTTGAGACGCGGGTTATAGCGGAAAGTGATGGCGGTGAGCTATGAGTATTTCTGAAAAGAGTAAGAGGATTTGAGCAGAGTGCGTTGACCCCTTTTTTTGGGTCATCAGGGAGGTGTAATGAAATCAATCGGTTACGCAGGGGGGTGAAAAAAAGGGTGAAATGCTTGTTAGCGGGATATTTTTCTTTAGAAACGAGAGGTTATCCAGCAAAGTGTCTA # Right flank : ATGCAAGACGGTCCCGGCGTGGTTGCCTGCGCTCGACACTATCTTGCAGGTAGCAAAAGTCTTGGCGAGCTTCCAGGTGCAATCGATTTTCTTAAGCAGACAAATGCTCAAACAGAATCGTCGCCCCCACGATCATCAACACCACCCCACCCGCAATCTCGGCCCGCTTGCCAACCATCGTCCCCAGCACCCGACCCAGCATCACTCCGATCGTCACCATGATCATGGTGGCCAAACCAATAGCCGCTGCCGCTACCACAATATTCACATCGACAAACGCCAGGCCAACACCGACAGCCAGCGCATCGATGCTCGTCGCAAAGGCCGTGACGGCCAGTACAAGAAACGAATGCTGGCTGGTCTTCTCCTGCTCCTCATCCTCGTCTTTCACGCCGTTGTAGATCATGTGCAGGCCCAGGGCGATCAGCAGCGTGAAGGCGATCCAGTGATCCCAGTCCGCGACCCAGGCGGTGGCAGCCTGGCCGATCGTCCAGCCGACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //