Array 1 507382-508568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRW010000002.1 Salmonella enterica strain SC1 NODE_2_length_745740_cov_128.632489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 507382 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 507443 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 507504 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 507565 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 507626 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 507687 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 507748 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 507809 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 507870 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 507931 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 507992 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 508053 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 508114 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 508175 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 508236 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 508297 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 508358 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 508419 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 508480 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 508541 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 524739-526479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRW010000002.1 Salmonella enterica strain SC1 NODE_2_length_745740_cov_128.632489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 524739 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 524800 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 524861 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 524922 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 524983 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 525044 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 525105 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 525166 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 525227 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 525288 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 525349 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 525410 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 525472 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 525534 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 525595 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 525656 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 525717 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 525778 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 525839 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 525900 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 525961 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 526022 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 526084 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 526145 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 526206 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 526267 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 526328 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 526389 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 526450 29 93.1 0 A..............A............. | A [526476] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //