Array 1 151067-151365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================== ================== 151067 30 73.3 28 AGAG..A....C................TC ATGTTCGACCACGACACGGACAAAGTGC 151125 30 90.0 29 C....G......................T. CGGTCCTCCCAGTACGTCTTGGTGAGGAG 151184 30 100.0 59 .............................. AGCACGGCACCCTCCACACACGCGAACGCGGTCGACATCGGCGCACCGGTCTACCCCGC 151273 30 90.0 29 .C...G.......................C CGGCAGGGGAGAAGTGCCAGAGGTGTACG TA [151287] 151334 30 86.7 0 .C...G......................AA | GC [151351] ========== ====== ====== ====== ============================== =========================================================== ================== 5 30 88.0 36 GTCTGCTCCCCGCGCGCGGGGATGGACCCG # Left flank : GGAGGTGATCGTGCCGTCGCTGGCGAAGTCGCTGGCCGCCGTCCACGAACAACGCCGGGCCCTGGAGGCCCGGATCGAGGCCCTGCTGGAGGCCCACCCTCTTTCCCAGGTCCTGACCTCGATGCCCGGCATCGGTGTCAGGACCGCCGCCATCCTCCTGTCCACCGTCGGCGACGGCAGCTCGTTCCCGAGCGCCGCCCACCTGGCCTCCTACGCGGGCCTCGCCCCGGCCACGAAGCAGTCCGGCACGTCGATCTACGGCGAACACGCCCCCAGAGGCGGGAACCGGCAACTGAAACGCGCGATGTTCCTCTCCGCGTTCGCAGCCCTGCACGATCCCGCCTCCCGCACCTACTACGACCGCTGCCGAGCCCGCGGCAAAACCCACACCCAAGCCCTCCTCCGCCTCGCCCGCCACCGCATCAGCGTCCTCTTCACCATGCTCCGCGACGGAACCTTCTACGAACCCAGAACCCCCCGCACCGCTTGACGAAAGACAT # Right flank : ACACCGTCACCCTCCAGATCTTGCCGCTCACGCTGGTCCAGCAGCGCGCGATGACCTCACCACCCCCGGCCCCGCGACCTGCCAGGCCACCGCCGCCGAGGTCGAGCGGCCACCCACGGCCTGCACGACGCCCTCGCCCGCTTCGGCCGGGCGGCTGGGTCGGGGTCGGGGTCGCGCCAGCGGTCCGCCCGCCCCAGCTGCCGGGGGCATCGCGACCTTCATTCGAACATATAATCGAGCCATGATGGAGGCGGAACGGTGGCGTGCGATGGCCGGGCCATGGGCCCGCGCCGTGCTGCCTGACGACCAGGAGCTCGATGTCGTGGTGGTCGAGCGGGTGCGCGCCGCCGATGGCACCTGGTGGTACGAGGCGGATGCGATCTTGCCCGCCCGGTACCAGGCGTCCGACGGGTCGACGCGGCCCGTGGGGGCCCCGTTGGTGCTCACCCGTGCCCCCAGTCCTACTCGAAAATATGGCTGGTCGCGCGCACCGTAGGCAC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:-0.36, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCTCCCCGCGCGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2687598-2686720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================= ================== 2687597 29 62.1 157 TG..C.T...A.G......T.G..T.GG. GGCCGGTCTGATTGTGGGGTGGACTGCGGATAGGCTGCGGGGGCTGGCTTGTCGGGAGGTTGAGGTGAACATTATGCCGGGCTTGGGCGATAGGCCGGAGTCCGCGGAAGTTGCAAGAAACCGGGGCACCGCGCGATAAAGGTGCAGGTCAATTGCT C [2687578] 2687410 29 96.6 32 ................T............ GCCTCGCGCACCCACCGCACGTACCGAGCATT 2687349 29 100.0 32 ............................. GCGCAACGTGGCGCCGTATTCGGTACGACGGG 2687288 29 100.0 32 ............................. TCTTCGGGGGTGTAGATGGCGCCGTGCAACAC 2687227 29 96.6 32 .....................G....... CGGCAGTCACCAGCGCCATGGAGTGGGCTGCC 2687166 27 93.1 32 ........--................... CGCGAGGGCAACACGGGCATCGTCTCCTGCGC 2687107 29 93.1 32 .................AA.......... GGCAGATTCAGCGCCGAATCGCCGCTGCGATC 2687046 27 86.2 32 ........--....T.............G ACCGGGCGACCCCCACGGCTTCACCTCACCAA 2686987 27 89.7 32 ........--..................T CCGGTCCCCGTAAAAGGGTGGTGCAGGCAGGG 2686928 27 86.2 31 ...A....--...............T... GACCGGGCTGGTCGGATCGCCTGCACCCTGC 2686869 29 86.2 31 ........T........A.......A..G CGCACCAGCTCCGGGCCGCGTTCGCCGACCC 2686808 28 86.2 32 ....-.T..T...............A... TGGGCCGGCAGCCGCCACCCGTACTGGCTGAT 2686748 29 72.4 0 .........C...A.......CCCC.T.A | ========== ====== ====== ====== ============================= ============================================================================================================================================================= ================== 13 29 88.3 42 CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Left flank : TCTCCGAGGGGCTGCGCCAGGAGTCCGCCGGCGACATCAGGGTCACCCTCGTCTCCCCGGGGGTGACCGAGTCCGAACTCGCTGACACTATCTCCGACCCCGTGGCCAGGGAGGCCATGCGGACCTACCGCGCCGTGGCCCTACCCGCCTCCGCCATAGCGGACGCCATCGCCTACGCCATCTCCCAGCCCCCACAGGTCGATGTCAACGAAGTCATCGTCCGCCCGGCCGCGAGCGCCCAGTAAGCCTCAGTGGTGCTGTTCGTTTCGCTCGCGGGGGCAGCGTCAGCCGTGCTGATGCTGGCTTGCACGAACTCGCCCCGGCCCGCCTCTTGCCATGCGACTTTCCGAGGGGCGGGCGCCTTGGCGCTACGCCGAGGCGGGCCAGGCCCTCGCCTCGCTCGCCGGTTCGTACACCGTCCGGGCTGCGTGCCGCGCCTGCCCTGGCGACTGTCGTGTCAGCGGGCGGCCGGGTAACAGGGCGCTGGAGGTGCGCAGTTG # Right flank : CCCACCCACCCCCTCCCGACACACATCCCGCACCTCACCCAACGGCTGGAACCCAGCCGACGCGTACGTCGCCACCGCGCCGACGTTGGACGTCGGGGCGCTGACCAGCGCGCTGGAGGAACCCAACTCCCGCAGGGTGACCGCGGCGGCGAGGGTGATGGCCTTGCCGTAGCCGCGACCTCGGTGTTCGTGGTGGACGCCCATCGGCTCCAGCACTCCGGGCTTGCCCGGGCCCGCCGACCAGACCGTCACCGTCGCCACCGCCTCGCCACGGGCGTCGTACGCGAGCAGGCAGCGGGCGTCGGCGTACGGCAGGCCGGCGGCCATCGCGCGCCAGCGGTCGGCCGTGAACGTCGACCCGCCGAACGACGCCCGCTGCACGTCGGCTCGTGCCCGCGCCCGTTCCGGGCCGACCACCTCGATCTGTACACCCGGGTCCTCCACCGGCTCCGTGAGGTCGCGGCGCAGTGGGGTCCACGGCTCGTCGGGGTGCCAGCCCG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:-0.98, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2693288-2692959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2693287 29 100.0 32 ............................. GGTTCATGATCCAGGTCACGAGGCCGGTCGTG 2693226 29 100.0 32 ............................. ACCCCGTCGCGGGTGCCGACGCCGGCAGAGTC 2693165 27 93.1 32 ........--................... ACCTCGAGCTCGGGCCCGGTCAGGTCGAGGCG 2693106 28 93.1 30 .................-...T....... TGCGGGCGCCCCGGCCCGCAAGAAGGGTGA 2693046 27 86.2 32 GC......--................... CCGTGTCGGCCGCCCAGTCTCCGGTTCGCAGC 2692987 29 89.7 0 ........................T..TG | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 CTGGTCCCCGCGCGCGCGGGGATGGACCC # Left flank : CTGGCTCCTGATCCGGCGGCCGATCCGTACATCGTCCGCGCCATCTGCCTCACCTGCGCCGACCAGTCGCCGGAACCCGAACCGTCGCAGTCCATCACCGGCCAGCACCAGCGGGCTCAGCGCTGGTGTACGAGCCACGCGGCCCGCGACCATCCCGACGGCCGCCACCTGCGCTACACCGCCCATGTCACCTTGCGGTGGCTGGTCACACCCGCCGAGGACATCGGGCCCATCGCGCCGTAGGCGCGCGAAGGCGGGGAGCGTGGGGTGGCGTACAGGCGCACGTCAGGGTGAACCGTCCATCGGTGGCGGCCGGTTCGCGCTCCAAGAGGCTGGTGTTGGCGTCCGGCTCACGTGTGGAGCGGCCGGCGGATACGCTGCGAACACCGTCGTGCCGGGAGGTTGGGGTGGGCATTGTGCCGGACTTGGGCGATAGGTCGGAGTTCGTGGAAGTCGCAAAAAACCGGGGTACTGCCCGATAAACCCGCAGGTCAATTGCT # Right flank : GTGTGATCGCCTAATCAACTGTCGCCAGTTCCCCGGGGAGTCCAGCCAGCTGGTGACTGACTGTGGTCGCCAGCGGCTTGTCGCGCCACCGGGTGATGGCCTTGTCCTGGTAGCCGAGCGAGCCCGATACGACGGCGCGGGATTCGGCACGGGGCCGGAGAACAGTTGAGAATGGGGGGTGTTAACTTCCTTCCCGTGGCGAAGCACCAGGACGAGACCAGGGCGGCCTATGACGGGGTCGTCGAGTTATATGCGTCGATGTTCGCTAATCGACTGGAGACGCAGCCGTTCGCGCGGAACATGATCGGCACCTTCGCCGAGCTGGTGCGTGGAACGGGGAATTCGCGGGTGGCCGATGTCGGCTGCGGGCCCGGTCATCTGACGGCCATGCTGCACGACCTGGGGCTCGATGCCTTCGGGCTCGACCTCTCCCCGGCCATGGTCGACCACGCCCGGCGGGCCCATCCGGCGCTGAAGTTCGATGAGGCCCGGATGGAGGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2697249-2696797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2697248 30 100.0 31 .............................. CCAAACACACCGACGGTGTCGCCATGGACAC 2697187 30 93.3 31 .....................G......G. CGACGAGTACCCCGAGACCGCACGAGACCGG 2697126 30 93.3 31 .....................G.......T CCACGTGATGCACGGCGCCGGTGATGGGGTC 2697065 30 96.7 31 .....................G........ AGACGGTCGTCCAGGTCGCGACCTCGTACTT 2697004 30 93.3 28 .........................C...C CAGAGAGGCCGCAGCTCAGACAACGAAG 2696946 30 96.7 31 .............................A TCATCGTCACGATGAAGGTCGGCAAGCAGAA 2696885 30 86.7 31 ..C.CT....................G... AGGCCGACGGCATCGACGGTGTCCTGGCTCT 2696824 28 93.3 0 ..............--.............. | ========== ====== ====== ====== ============================== =============================== ================== 8 30 94.2 31 CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : TCATCGCGATCACGGGCGCCCCCACCCGCGTAGCCACGGTCGCCGACCACGCCAACGCCCACCGCCTGGGCACCCACCTGGCCAACGCGGAAAACGACCCGACGCTGCTCGCGGAGGCAGCCGACCTCGGCCGCCAGGGCCGCTACACACCGCGTGTGGAGCGGACGTACCGCCTGGACGAGGTGCGGGAGGCCCACGCGTACGGGGAGCGGGGGCGGACTCGGGGGAAGGTTGTGGTGCGGGTGTGAGGTGGTGAGTTGCGCGTGGGGGACTCGGCGTCGGCCGATGGTGGCTTCCGCAGTGGGCTGTGGTGGGAGGTGAGTTGAGGGCTGAGTGTCGATATGTGGCGGCTTCGCGCGTGGGGGTGGGGGATAACCTGGGGAGCCTGGCTGGTGAGGGGGAGCGTTATGGGTCGTTTGCAGGACTTGGGTGGTAGGTCGGAGTTCGCGAAAGTTGCAAAAAACCGGGGTGGCGCGCGGTAAAGCCGCAGGTCAATTGCT # Right flank : GCGTCGACTACAGCGGCAGCCCTGACGAGGACAGGTCCCCGTGCGCGTGGTTGGCCCCGCGTCGTAGATGGCGCCCTCGGCCGCGACGCATGTGTCCCTGCCTGGTGCGGGATCAGGGCACCCTCCATGGGAATGCGGGCGGCAACGTCGTCCTGCTTTTCCAGGCGGTGGCAACCAGCGAACTACGAGCCCGAAACGAACGCCTTCGTCTCGGCAAGCGCCGCGTCCCACGGAAACGGACGCGTCTGACCCGGCTCGTTGGGAACGAACCCGCCGTCCCCGTACAACACACTGACCCCCGCCGCGCGCAGCTCCGCGACGGAGCGTGCGAACTGGGGGTGCTGGGCGTACGCCGAATTCACACACGGCATCGTGATCAGCGGAATGCCCTTACCGATGCCCTCGGCTACGACACCCACCGGAAAGGACGAGGTCAGCCCCAACGCCCAGGTGTTGAGGCTGTTCATGGTGATCGGGGCGAACAGGATGGCATCGGCTCT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : CTGGTCCCCGCGCGTGCGGGGGTGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3194529-3194803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3194529 29 100.0 32 ............................. TGCTACCGGTCAGCGAATTCAGGTATCGGGGT 3194590 29 93.1 32 .C..........................T GACCCCCAGTAGCCGCGCCACAGCCTCGGCGT 3194651 29 100.0 32 ............................. GGGACCACCCAGATGCAGGGGATCTTGACGAC 3194712 29 100.0 33 ............................. TCGTCGAAGGTCCGCTCGGTGATGTAGTACAGG 3194774 29 96.6 0 .....................C....... | C [3194799] ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.9 32 CTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCCCGCATCCCGCCGCGTGTACGCGCGGCTACGTACGCTGAGCTCATGGTTGAGAACACCGTGCCCGTACGGGAAGCCCGCGCGCGTCTGGCGGACTACATCAACCGGGCCGAGGAGGGCGTTCCGACCGTCATCACGCGCGACGGCGTATCGGTGGCGGCCCTGGTCCCGATTTCGGACTTCGAAGCGCTGGAGGAAGCGGCCGACGTGGTGTTGGCGCGTGAGGCGGAGGCGGCCCTGACCGAGGGCGGCCCCACCGTGACGATGGCCGAACTGCTGGCGGGCCTGTTCAGCGAGCGGGATGCGGGCGCGGCGTGAGGTGCGCGTTCCGGTTCGCCGCGTCAATTCCACGGCACGTCGAGCGTCGCCGTGGGCCGAATAGCCTCCCCGCCCGAAAGGACCTTGCGTGAGCGATTTGGCGAGATGGGGCGATAGGTCGCGATCAGTGGAAGTTTCAGAAAACTGGGGTTCCGCGCGATAAAGGTGCAGGTCAATTGCT # Right flank : CGCACGCGCCGGCGCTCCGCCGTCACCCCCCGGCGCGTTCCGCCACTCCGAAGGCGATCCCGTCCAGAATGTCGTGCTCGCTCACGACCACCTCGCGCGCGCCCGCGCGTTCCATCAGGGCCAGCAGGACCAGTGCGCCCGCCCCGATGACGTCCACGCGGCCCGGGTGCATGACCGGGATGGCGGCGCGTTCGGCGTGGGTGGAGTGGAGGAGGCGGTCGGTGATCTCGCGGACGCGGTCGAGTGGAATGACCGCGTGGTGGATGGCGGCCGAGTCGTACGCGGGCAGGTCGAGTGCGATGGCGGCGATCGTGGTGACCGAGCCGGCCAGGCCGACCAGGGTGTAGCCGCCGTCGGCGGGGCGGAGCGGGACCGTTTGCTCGACCGTGTCGAGGGCGGCCTCCACGTCGGCCCGTATCGCGGCGATCTGGGCCTCGGTCGGCGTGCCGGGCTCGGGGACCTGGCCGGTCGCGTCGGCGAGGTGGCGTTCCGTCATGCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3553897-3554472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3553897 29 96.6 32 .....................G....... GCGCGCCCGCGACGGTGCCCGGAGGCAGAAGG 3553958 29 93.1 32 .....................G......G GCGTCCGGGAAGACCTGGACATGGAGCCGGCG 3554019 29 96.6 32 .....................G....... TGTTCCGAGGTAGTAGAGCTCGTCCCAAGAAA 3554080 29 100.0 32 ............................. CGCCACGCGGTCCAGGAGAGGGCGAAGGGGCG 3554141 29 100.0 32 ............................. GGTGTGTGCTGCTGGGATGCTGGGGATCGGGG 3554202 29 100.0 32 ............................. TTGATCACGTCGCGCTGTACGTCACAGACTGC 3554263 29 100.0 32 ............................. ACCGCCACGCCGCCAGGCGTGTCCGCTACCGC 3554324 28 89.7 32 T...............-....G....... ATGTCGCTGACCTTCTTCGGCGCGACCTTCAG 3554384 29 93.1 33 .....................G......T TCGTCGGCGTACTGGAGAGGCCAGGGGCCGCCG 3554446 27 79.3 0 .............--......C..TG..A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 94.8 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCGCGGTACTCCTCGGCCGGCACGACCGCCTCACATCGGCCACCGTGCTCGATGACCATCTCGACGAACCACGCGTCGGGGCCGTCAGCCAGACACGAGACCCCGCACAGCTCGGCCGGGGCGAACTGACGGATCTCGTCGGCGAGTAGAGCTCTGACCTTTTCCTCGACCTACGCGGGGAGCCCGCGATGTCCGGTGATCCCGAGACGCATGGAGACCTCTTCCTGTGAGACTAGAGATACATGTCCGTGAGCCGCTCATCGAAAGCGCGGACGGCTCTGAGAGGCCCGGGCGACGAGCGCGATGGTGGCCGCGCGGTGGCTGGTCACCCTCGCCGAGGGCGTCGAGCCGAGCGCTGGACTGCGAGCAGGGCGATAGCCTGGAAAGCCTGACCGGCAGGGGGCTTTATGAGTCATATGCCGAGCTTGAGCGGTAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTACCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : ACCAACACCCAGTCACACCCGCCCCGTCACCTCCCCCCGCCGCGCCCCCTCGGGCCAGACGACATCCACGGGAATCCCCACCTCCCGTGCCGCCACCACCACATCGGCCGTTCCCCCGCCCTTGCCGCTCGGGGGTGCGCCGTCCCATACCGCGACCAGCCGGTCAGCCCGCTCCAGCAGCACCGCATTGGCGGCCTCGTAGGCAGCCCGGTTCGCCGTCTCGTGGGGCATGACGAGCGTCTCGTGAGCGGCCAGGCACAGGCGGTCGAAGGTGTCCGCGTGGGCGGGCTTGACCTTCGCTTCGCGGTAGTCCCGCGACGGAATGACGACGACCAGGCGCCCACCCACTCCCAACACGGCCTCGGCGAACAGCGAGTCCGCTCCGGCCGCGATGCAGGACACGCCCGTCAGCTCGTCGTCGCGATGCTGGGTGATGACGTGTCGCAGGGCCTCGCGCACGAGGGCGGTGGTGGCGTCGGCCAGGTCGATGTGTCCGGTGA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3560118-3560970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 3560118 29 80.0 31 TCT.GT...-.................... AGGCCGGGCACGTCGACCACCGCGACCGGGT 3560178 30 96.7 31 .............................C GTGCGTCACCACCGTTTGTGCATGACGAAAT 3560239 30 96.7 31 .............................T ACGTCCACGGACTCGTACCCGACTTGCACGC 3560300 29 96.7 31 ................-............. GGCCGCTCGTCTTGCGCGCCAGACTCCGCTG 3560360 30 93.3 31 .C...........................C GATGCCGTACTTGAGGCCCATGACGGTCAGG 3560421 30 100.0 31 .............................. CCCTCAACAACTTCTACACCTACAACAGGAT 3560482 30 93.3 31 ................G............C GGCACGTGGCGCCTTGCGCCGTGGATATCGC 3560543 30 93.3 31 .........C...............C.... CCCGCAGCACGCCAATGATCCCGTGCGCCTT 3560604 21 70.0 35 ................-.....-------- CCCGAGAGACGCAGAGAAGCGGTTCGGCCGCGTCC 3560660 29 86.7 31 .................-A.........TC GTCCCTCTCTCCTTGGCTCGGTGTGGGCCGG 3560720 30 90.0 71 ................G........C...A CCTTTGTGAAGGTGGGCGAGGGCTACGAGAACTGGTCCCCGGTCTCGAAGCTGGCGTCGGGCCACAGGTTG 3560821 30 100.0 31 .............................. CCTTGATCGCGTCCGCGATGCGGATGTTGAT GG [3560838] 3560884 28 83.3 31 ........--...........A...G...A GCTCGGGCCGTGTCTGGTGCTCGGCGAAGCG 3560943 28 86.7 0 ........--...........A..A..... | ========== ====== ====== ====== ============================== ======================================================================= ================== 14 30 90.5 34 CTGGTCCCCGCGCGCGCGGGGGTGGTCCCG # Left flank : TGATCCAGCGGCCGACCCGTACACCGTTCGCGCCACGTGTCTCACCTGCGCCGACCAGTCGCCGGAACCCGAACCGTCGCAGTCCATCACCGGCCAGCACCAGCAGGCTCAACGCTGGTGCACCAGCCACGCCGCCCGCGACCACCCCGACGGCCGCCACCTCCGCTACACCGCCCACGTCACCTTGCGGTGGCTGGTCACCCCGGCCGAGGACATCGGGCCCATCGCGCCGTAGGCGGGCGAAGGCGGGGAGCGTGACGTGGCGTTGAGGCACACGCCAGAGTGAACCGTGGATCGGTGGGGGGTAGTTGCGCGGTTGCGCGCTTCAAGAGGCTGGTGTTGGCGTCCGGCTCACGTGTGGAGCGGCCTGCGGATACGCTGCGAACACCGTCTTGCCGGGAGGTTGGGGTGGGCATTGCGCCGGACTTGGGTGATAGGTCGGAGTTCGTGGAAGTTGCAAAAAACCGGGGTACTGCCCGGTAAACCCGCAGGTCAATTGC # Right flank : GGCCCGGGGCAGACCGCGTGCATGTCGACAATCTCGTCCCCGCGCGCAGGGACGACGAACCCACCCCACCCCCACCCGCGGCTCAATCAAGCCCCGCTCGTGCCGCCCGCCCCGCGTTGCGTGACTCATAGGGCGGCAGCCGCCCACCCGGTACCGTGGTCCGAATGACCACCTCGCGGGATCGAGCGGCACGCAGGACCCGGGGAGCCGGGCAACGCGACGGCGCCCGTGGGGCGCCGCGCACGCTGGCGGAAGAGTTGCGGGGGCGCCCCGACGGCGCGCTCGAACTGTTGCTGCGCGCCCGGCCTGACCTGCTCAATCCGGTACCGAACGACCTCACGCAGCTCGCCACCAGGGCGGGTACCCGGGCGTCGGTCGTACGGGCCGTCGAGCGGCTGAACCGGTTCGCGCTCCAGGTCGCCGAGGCGCTGGCCGTGGCGCCCGACCCGTGCCCGTACGAGACGCTGCGCGACCTGCTGACCGGCGACCCCGACACGCCC # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4672181-4671565 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 4672180 29 100.0 32 ............................. CCAGCCTGGTGGTAGCCCATGGCCATGCCACC 4672119 29 100.0 32 ............................. CCCGGGTCGGTCAGGTCCACGTCCTCCGCATC 4672058 29 100.0 32 ............................. CACTGCGCGGAAATCCCGAGCTGACTCGCCAC 4671997 29 100.0 32 ............................. CGGGCCTGCCCACCGCCATCCACTGGATCGGC 4671936 29 96.6 33 ................G............ GGCGGCGGTGTACGAGTCAACGATCTCGATCTC 4671874 29 100.0 32 ............................. GTGGCAACGTCGCCAGGATTCCCACCCGTCCA T [4671863] 4671812 29 96.6 32 ...................C......... GGGCGCAGGAGCAGGATGAAGCGCGCGCGGTG 4671751 29 100.0 72 ............................. CAGATCGTCGCGATCGTCAGGCCCCAGGCGGCCTGGTCCCCAGATCGTCGCGATCGTCAGGCCCCAGGCGGC 4671650 27 93.1 32 ................--........... GACGGCCCGGCGGCAGCGGCAGCGCGGGTGCG 4671591 27 82.8 0 ................--...T...G..T | ========== ====== ====== ====== ============================= ======================================================================== ================== 10 29 96.9 37 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : TTTGACTATCGCTCGTCGACCGATACAGATCGACTTCTTTCCTTGTCCTTCCCCATTTCGACCGCCTACCGCACGGATGTCGCACATCCGGTTGTGAGTGTTGCCGGCTGCCGCCGGAGGGCCCGACGTTGCGTAACCGACCACTTCCGGAGTGTTCCCCGGCCGCCCTCCCGACTCTGCCGCCGAAGCGCCGGCCGGCCAACGCGGCTCGCGGGGCGGGTACTTCGCGTTCTTCCGTGCTGGGTGCGCCGTCGGCGGGGGTGGGTTGCCGTGCCGGAGCGGTGCGCGATACCGCAACTTGGCCTGCTCGCCTGGAGGGTTTGGCCGGGGCTGGCGCGTCGCGCGCGGAGTACGTCGCTTACGGGCTGGCCGATAGCCTGGGGGCTTGGCGAAGGGGGGCGTGGGCGGTGAGCGATTCACCCCATATGCCCTTGGTGCCGGAATTTCGGGAAGTTGCAGAAAACGGGGTGGGCTCCGGGTAACGCCGCAGGTCAATTGCT # Right flank : TCGGCATCGTCGTATGGGTACGGTCACGCGCCCGCGCGCCGCGCGGCTCACGCGCTCGGCGAGGGGGCCGGAGCCCCCTGCGCTCCGTCCTCACACCACCTCCCCGCCCCGGCCCACCACGAACGCCGGCGTCTTGCCCAGGGCCGCGCTCAGCGCGGTGGCGATGCCGGTCTTGTCGGCAAGGTCGTGCGCGCTGGCCCAGCGGCGCTCGTGCTGGCAGTCGTGGGGGCACGGTGAGGTGCTGTGGTCGGTCACGTGTACGTCGTCGCCGTCGGTCCAGCCGCCGTCCACGATGATGACCAACTGCTCCGGCGCGTTGCCCGCAGCCGGGAGCTGGTCCAGGGCGAGGGCGCGGTGCACGGTCGGCAGCTCAAGGCCGAGGGCGTACGCCGCCCGCCCGGCCGCGGACATGATTCCCTCGCCTGCGCGGAGCAGCACACCCGGGAGCTGCCACGGCGTCCCCGTACGCCGCACCTGGAGCACGCGCGGCCAGCCGTACG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 4866008-4865804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 4866007 27 100.0 32 ........................... CTGCACGAGGTCTGTCCCGGGCCTTACACGGG 4865948 27 96.3 32 ..A........................ GGCCAGCGGTTCTCCGCCGTGGCGCTGTACCG 4865889 27 92.6 32 ...................G...C... AACGGCGGAGAGTGGATCGGGACCGTCGTGCG 4865830 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================ ================== 4 27 97.2 32 CTGGTCCCCGCGCGCGGGGATGGTCCC # Left flank : ACCCCGATGTCACGGCGGTCAGCGACGGCGGCGGTCGCGCCAGGGCCGCGCTCCACCCGATCAGGGGCCGGGAGGACGTCGCCCACCACCTCATGACCATCGCCACCCAGGCGCCCGACCTGACGATGGTGGAGCGCACGGTCAACGGCCAGCCCGGCGTGGTCCTCCAACTGGGCGGCGTCACAGTGTCGGTGATGTCCCTCGACGTCAGCGGCGACCGCATCACCCACATCTGGGGCATCCGCAACCCGGACAAGCTCCGACCTTGGACGGCGGGGTGAGTTGTGGGCGGGTGGGTGCCTTCCGGGGCGGGTTGAGTGTGAGCGGGTGGGGGCAGGTACGCATACGCCGTGTGGGTGCGGGGCGGGCCCGATAGCCTGGGCGTACGGCTTCACGGGGAGGGCGCCGTGAGTAGTTTGTCGGGCTTGGGTGGTAGGTCGGAGTCTGCGGAAGTTGCAGAAAACCGGGGTCCAGCGCGGTAAAGCCGCAGGTCGATTGCT # Right flank : CATACGCCCGGGCGCCTCACCGGCCCGGCCCTCCCCGTCAGTCTCCCGCACCCGGGCGACCCGCCAGCATGCGGATGCCCACCGGCCCTCAAGGGGCCGGGCCCACCCCACAGCGGACCCCACCCCACCGCCCCCGCGCTCCGCGCGGCAGCGGGGTGCGTCAGCGCACCACGTCGTAGATGACCTTCTGGATGCCGTTCGCGTACGCCTTGTGCTCGACCAGCTTCAGCTTCTGCGTGTCCTTGTCCGTGTCGCTGAACAGGCGCTCGCCCGCGCCGAGGAGGAGGGGGAAGACCATCAGGTGGTAGCGGTCGATCAGGCCGGCGTCGGAGAGGCTGTGGTGGAGCCTGACGCTGCCGTGCATGATGATCGGGCCGCCCTCGGTCTCCTTCAGCGCGGCCACGTCGTCCAGCGAGCGCAGGATCGTGGTCGGGCCCCAGCCGTCGACCAGGGACGACTCGGGGAGGGTGGTGGAGACGACGTACTTGGGCATGTCCTTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 4905085-4904691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4905084 29 100.0 32 ............................. GGCGTGGACACTTGTCGTGCCGCCGCCCGGTC 4905023 29 100.0 32 ............................. AACACACCGCGCCGAGCGGCATCGGCGGCCTG 4904962 29 100.0 32 ............................. GACACGTAGACGACGGGGAACTGCTGGAAGAC 4904901 29 96.6 32 ...C......................... CCGTGCCGCGCGCTGAGGATTAGAACGGTTCC 4904840 29 100.0 32 ............................. CTGCTCAGGCTTGTGTCGGGCCCTCTCGTTGT 4904779 29 96.6 32 .G........................... CCATCCGGGTCCAGGAGCGCCCCACCCTCGTC 4904718 28 79.3 0 ...T.............-.....T.AA.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCTGCACGCGCAGGGGTGGCCCG # Left flank : CCGAGCAGGGTCCAGTCGAGCGCGGGGTTTGCGTCAGTGTCAGTCACGAGGCGGAAGGATATATTCCGGCTCTGACATCGCCGTTCTTCATCGCGGGGTATACCGGGCCGTGATCACCGCCTAACCAGATGGCTGGGGCCCGCGTGAGGCTCTGCCCCTCGCCAACGCCCCGTCCCCGGCCCCGCTTGGGAAGGGCCCCTGTGGACGGGACGGTGGCGCCCGATCGACTGCGGCACGCTGCGGCCATGGCACCGTCGGCTGCGATGGCCGCGAAAATCCCGGCTTGTCTGGCGACTTGGAGACACGTCTGCGTGGACAGGTGTCCCGACGTACTGATCTGCGGGTGAGGGGCACACGTGTTGCTGGTCGTCGTGGGTTCTCTTGGGCGAGTTGGAGTCGGAGTGGGCTACGTTGAGTTGGTCACGAACTGAGCGCGGGAACGGCGGAACGCGATTGGTCAAGTAATTGCAAAGTGGCTCTAACGGTGCAGGTCGGGAAGT # Right flank : GACCGGTGCTCCAGCAGGCCAGCCGGCGAGTTAGCCGCACCCCGTCGCGCCGCTGCCGCCCGTGGTCGCGCGAAGCGCGACGGACAGCGCCGTCGTGCCCCCAGGGCACGCCCTTCGGCCCGGCGTCCGGGCGGGGCGGGAGGGCCGCCCGCGGCCCGGACGCTCCGGCCGGCTGCGAGCCGGGCCAGGTTGAGCCGTCCCGGAGGGACGCCCTTCGTACAGGGGCCGGCGACCGGGGCCGGTCGCCGACGCGGCCGGGCCCCGACGGCGATGGGCGGAACGTGGGGTGGGCGGCTCGATGCCGTCCACCCCACGGCCCGGCGGCCGGGGTCCGGCCGGGCGGTGGCTCCCGCCCGGCCGGGCCTGCTACGCGGCGACCGGTTCGCGTGCGGCGACGCGGCACCGGGTGAGTACCGTCTGTGCGGTCTCGCCGTAGATGCTGTGGTCCTTGACCGTGCCGGTCAGCTCGACCTCGTCGCCCTGGTCGGGGACGTCGGCGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCACGCGCAGGGGTGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 11 5114092-5114426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5114092 30 100.0 31 .............................. ATTTGCCGAAGCCGACCACCGCGGGCTCGAC 5114153 30 100.0 31 .............................. GCGGGTCCGGGAGCTCCAGCGCCGGCAAGTC 5114214 30 96.7 31 .............................C GCGCTCAGCGCGACGTCGCGACCCAGGAGCA 5114275 30 96.7 31 .............................C TCAGCCAGGCCCGGGTGCGCCAGGCCGCGAT 5114336 30 93.3 31 .........................T...C CTGGCGCGGGCGCTCCCCGCGAGGGCCGGCA 5114397 30 90.0 0 .............T.......T...G.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.1 31 CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : CTTGGGCCTGACCCGGAGGCTGACGCCTACCTCGTCCGCGCGACGTGCGTGACCTGCGGCGAACAGTCATCGGAGCCTGAGCCGTCGGAGTCCATCACGGGCCAACACCGCCTGGCCCAGCGTTGGTGTACGAGCCACGCGGCCCGCGACCACCCCGACGGCCGCCACGTCCGCTACGCGGCGACGGTCACCTTGCGGTGGCTGGTCACCCCGGCTGAGGACATCGGTCCCGTGGCGCCGGGGAGGGAGGTGAGGGAGGGATCGGCGTGAGTTTCGGGGGTTGCGGCGGTCCTCGGCGAACGGGGTGTGAGCGTGGGTAGGTTGGGGCCGTGGGCGGGGTGCGGTCGGAAGGTGGGTGCGTTGGCCGCGCGTGCGGGGTGGGCTGCGTGGTCTGTTTTGGGGAGAGGTGCGGGGAGTTGGCGTGGTTAGGTGATAGGTCGGAGTTCGCGAAAGTTGCAAGAAACCAGGGTGTCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : GGAACGGCCCCAACCCCGCCCCGCAACCCCTGCTTCGCAGCGAAGCCCCCGCGCCGTCGCCGCACTTCAGAGGCGCACGGTCTTGTTCTGCCGGAGGTGAACACATGCCCGGTTGGGCCCGACGGTCATTACCGTCCAGACGTATGACGACGATGACAACGCGCACGGTCGAGTACCCGGCCGACGGCCTCACGATGGTGGGGCACCTCGCGATTCCGGCCGGCGTTGGGCGTCGGCCCGCGGTTCTGCTCGGGCCCGAGGGGCCGGGGCTGAACGATGTCCAGCGCCGACGGGCCGACGCGCTGGCCGAACTGGGTTACGTGGCGCTGGCCTTCGACATCAACGGTGGGCGTTGGTTCAGTGACCCCGAGGAGATGATGGCGTACATCATGCCTCTGCTTGACGACACCGAACGGATGCGCGGCATCGGCTACGCGGCGCTCGACGTGCTGCGCGCCGAACCGCGTACGGACCCCGATCGGATCGCCGCCATCGGGTAC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 5183798-5183462 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5183797 30 100.0 31 .............................. CGGCGTAGACGTAGCTCATCTCGCCGCGCCA 5183736 30 96.7 32 .............................C CGGACGGGTCCGTCGCCAGCACCACCCTCCTG 5183674 30 93.3 31 .........................G...G CCCCCGCCCTCGGCGACGTCCGCAACGCCGG 5183613 30 93.3 31 .................A...........G CCGGTATGGGAAACCGCGCAAGTGCGGTGCT 5183552 30 93.3 31 .....................G...C.... TGTCCTCGACCTTGTACGGCGTCTGAACACC 5183491 30 90.0 0 .............A..........A....G | ========== ====== ====== ====== ============================== ================================ ================== 6 30 94.4 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCA # Left flank : CGAATCCGTCGATTCGCTCTGGTCCCCGCGCACGCGGGGATGGCCCTGCGCACTCGGCTGCGGCGGACGCCGTTGCGGCCTGGTCCCCGCGCACGCGGGGATGGACCGGAGCGAGGTCATGGTGTCCGTTCCAATGGCTCGCTGGTCCCCGCGTACGCGGGGTGGCCCCGATACAGGCAGCACCCCCGGCAGGGTTCTTGCCGGGGGTGCTGCTCGTGGGCACCTGTTTTACACGTGCTATCCAGCGGAAGCACGTGCACAGCGACAGCGGCGGCGGGAGGTGCGCTGGGCACTGGAAGGGAAGGACTACCCCGGGGTGAAGATCCGCGGCGGGGCGGAACTCGAAGAACTGCTTGCGGCCCGAGCTGCGGACGTAGTCGCGTGACTGCCAAGACAGGAGCGTTGGGCTAGAGCGGGGAAACGATATGGGCGATAGGTCGCGATCAGTGGAAGTTGCAGAAATCCAGGGCTCCGCGAGATAAAGTCGCAGGTCAATTGCT # Right flank : GCACAACAGCGCCCCCGGCAGACTCTGCTGGGGGCACTGCTCATAGCGCCGATCGCCGTTGAATCATCATGAACTTGGGGCTACCTTGCTCAGCCCGTTGATGATGCGGTCCATCGCGTCGCCGCCCGTCGGGTCGGTGAGGTTGGCCAGCATCTTGAGGACGAAGCGCATGAGGATGGGGTGGGTCAGGCCGCGCTCGGTGGCGATCTTCATGATCTTCGGCTGGCCGATGAGCTTCACGAAGGCGCGGCCGAGCGTGTAGTAGCCGCCGTAGGTGTCCTTGAGGACGCGCGGGTAGCGCTCCAGCGCGGCCTCGCGCTGGGCGGCGGTCGGGCGGGCCTTGGCCTGGACGATGACCTCGGAGGCGATCTGCGCCGACTCCATGGCGTACGCGATGCCCTCGCCGTTGAACGGGTTGACCATGCCGCCCGAGTCGCCGACGAGCAGCAGGCCGCGCGTGTAGTGCGGCTGTCGGTTGAACGCCATCGGCAGCGCGGCGC # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 7126362-7126211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7126361 29 93.1 32 .....T...............A....... GCGTTGTCGATGAGGCTGAGGTGGCGGGCCTG 7126300 29 100.0 32 ............................. CGCTTGTCGTGCAGGAGGGATCAGCGTGACCG 7126239 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCGTGGCACGCCACGGCCCGCCGTCGACCCCGCCCGGCGACGCCGGCTTGGCTGAGCCACGCCCCGCGGCCCAGCCGGCACCCTCGCAGCGCCCCGGGACGCTCAGTGGTCACGCCGACGTCGCCGAGGTGAACATGCGGCGCGGCACCCGCTCCCCGGACGGCGCCCGGCCCCTCGGCTCGCCGCCATCGCCGCTGGTCAGGCCGTCGGACCGGCAAGTCGCCCCGACGAGTCGGCGAGTTGGGCGCAGACCGCCCCGGGCACGGCGAGACCCCGCTCGTACGTCATGCCATCGGGCGCCCCCAGGGTGAGAAGCCCCTCCGCCACCCGCTCGGCCGCCTCGCCACTGCCCGTGCTACTGAAACGCAACGCTAGGCTGAACAGCCCTCTCGTCGGAGGGACATGGCATGGGCGATTCATCGCGGTTGGGCGATAGGTCGCGATCGATGGAAGTTGCAGAAAGCCGGGGTTCCGCGAGATAAAACCCCAGGTCAATTGCT # Right flank : GCGAGCGGTACGAGGTGGACGAAAAGCGCGCCCGGTCCCCGCACGCAGGGTCCCGCAAGCTGTCGGCCCTCCATGCGCGACGGTACTGCCCCCCGAGCGCGGGGATCACCTCCAGCACCAACAGCCCTCCCCCACCCCCTGACCCCCGGCGACGAGCACGCCCCACCCACCCAGCGCACCACCAAAACCAGCACGCCCCCGCCCCACAACCCCGGCGCCCGCGTACGCCCCGGCGCGATCTTCCTCTATCACTGCTCGACCGTCATTACCTGGTCAGAGGAGATCCAAGTTTGTGAATCAATTCACACCTACCCCTTGGCCGGGCCCCGTTTTCCGTGTTGAGATGCGCGCACGACTTCCGGCTCGATGGCGCGCTTGGGGAGGGCAATGTGGCGGACACCGCCATGTCACGTTCTGGATCGTCGGATTCCGAAGGAGAGCCAGGAGGCGGGCTCCATGCCGGACTGTTGGACGACCCTCTGCACACGGCGGTATGGCGG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 8062629-8062226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8062628 37 100.0 36 ..................................... CGTGTTCGCGACGTGTTTCAGTTCCGCCGGGCCAAG 8062555 37 100.0 36 ..................................... AGCGCAGCCTGGGCCGCCGTGAAGCCGGTCGTCACC 8062482 37 94.6 35 ..........T...T...................... ACCGTCACCGGCCCCGGACTGACCGTCGGCGAGTA 8062410 37 91.9 37 ..........T....T.A................... TTCGCCGCGAGCTGGAGACCGATGGTGATCGCGCCGA 8062336 37 97.3 36 ..........T.......................... CTCAGCGGGCCGCCCACGACGGCCACCTCCAATCGC 8062263 37 94.6 0 ..........T....................T..... | A [8062247] ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.4 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : GACCTTCCACTTCCAACAGCCTGTCACGCCACGCACAGGTCCCCTTGCCGACATCGTGGATCAGCGCGAGGTAGGCGGCCAACTCCTCCGCACCGAATACCCACCCGAACTGCCGCGCAAGGTCCGCCGACCCTCGGAGATGATCCTCCAGCCTATGCCGCTGGCGCGACACCGAACTACGACTGTGTGCATACAACTGCCCCCCGGGCATGCTGAATCCCCCAGATCCGAGCGCGACCTTCACGCATCGCTGCTGTGACCGGGAACTTACACGGAGCCACTGACATCGACTTCCAGATACGGCGAATCGATGGGGTTCACAGCATGTGCGGCTATCCTGCCCACGCCATCCGCACCAAGGCCGTTCCCAGCTTCGGAACCCCAAGTACACACGCGACGCGCCGATCGCGCCGAAGGAAAATGTCCACTGCGTCCGGCATTGCTCTGCCTCGCAAGCTCGAACAGTTCCGCTGGCACGGCGTCTACACTGCTCAACCAGC # Right flank : ATATCGCCGTGCACGCGGCGCCTCTGACCGACCGGTGACGGCTGCCCTTGGAACTGCAGAGGCTACCGCCAGGTCGACGTCGAATCTCTTGGTTCGCTCACATTTGGCACGACCGGAAATATCGACTACAACAACACCCACTCTACGAGTGCGGCGATAAGAAGCCGCCGTCCGAAAGGTGGGTACACACGTTGGCAAAGATCATCGACAAGGGTGCCGAGGTGTCGGGCAAACGATGGATGGTCCGCTATCGCGAGCCTGGTGGCCGCACCGCGCGGCAGCGGGAGAAGTCGTTTGACCGCAAGAAGGATGCCGTCGACTTCGCGACCAAAGTCGAAAACGACAAGCGCGAAAGCATCTACATCGACCCTACAGCTGGCAGGGTGTCAGTTCGCCAGTACGCAGAGGACTGGTTGGCGCTCAAGGTGGCCTCGCCCGGCACCCTTGAGTCCTACGAGCGCATCATGCGTCTGCATGTCGTGCCGCATCTGGGCAGCAAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 15 8071055-8071457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054929.1 Streptomyces buecherae strain NA00687 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8071055 36 100.0 38 .................................... CATTTACGACATGGACAATAACGGCGGGGGTTCGCCGG 8071129 36 97.2 39 ................................A... CTCACAGCATCCGCAGCTCCGCGCACACCAGGCGCTGAG 8071204 36 100.0 37 .................................... CTTCGTCCTTCCCGAGCACTACAGCGTGTGCCGCCTA 8071277 36 97.2 37 ...........T........................ CTTCTGCGCGCGGCAGATCGCGTCCGCCACCACGCCG 8071350 36 97.2 36 .....................A.............. TGCTCCGCGTCCTGGGACGGCTGGAAGCTTCAGCGG 8071422 36 88.9 0 .........G.....T....T............G.. | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 96.8 38 GTGGCGACCACCCTCCGGGGCGGTCGAGGATCGCAA # Left flank : CAAGCTCGCCTCTTAGCACGCCACTTACGCGGCGAACTCTCTGGCTACCTACCTTGGACGGCCGCCTGATGGACCTCCTGGTTACCTACGACGTCGACACCACCTCCGCCGAAGGCCGCCGCCGACTGCGCCGCGTCGCCAAGCTCTGCGAAGGCCACGGACTCCGCGTCCAGCAGTCGGTCTTCGAGATCGTGGCAGATGACAAAAGCCTTCTTGAGCTCCTCGACCAACTCAACGCCACCATTGATGCCGACACTGACAACATCCGCATCTACCGCCTGCCCGCCCGAGCATTCGACGACGTCCAGACACTCGGCATCGCCCAGACCCAACCCCACCGCCAAGACCTCGTACTCTGACCGTGCACCCGCTTCGGAACCCCAAGTACACACACGACACGCAGACCACACCGAAGCACAATGACCGATTAGAGGCCATATGTCGACGGTTGGCCTTCCGAGAGGGCCAGGGCTGCAGCAGATTTCCCCTGTTCAATCGCC # Right flank : ACCTGCGTGGCATCGGCGACACAATTGTCCGCCAGGATGTGGCACTCGGCGTCGGCTTGGTGAGAGCCGCATCGATCGAGCAGCACAGGAGCCAGGGTGCTGGTGTGAGCCTCGCTCTCAGCGTGTGTTGAAGGGTGTCGGGTGGATCGTGTGGTGCGGGCGCCATCGGGCGGGGCAGCCAAAACGTTTACCAGACTGAGTCTTGGCCCACACGATTACCGAAGGGGGCAAGTGCTACGCCACCAACCACCTGACGACCTTCAACACAGACAAGCGCCTGGGGCCGTGGCAAGCCGGTGACTACCCTGCGACCCAATGGCTGTCGCATGGAGCGAGCCGGGCGGCAAGGCCCCCTAGATGTACCAACACAGCGCCGCACGCCGTCGCTTGGTCCCTGCGACCTAGCTGCGCGGCGTCAAGGGACTGTGCGGTAATGGCTGCCGTGGATCTCAACTCGCTGCGCAAACTCGTTGAAGGCCAGCTTCTCCGTATGGAGGGCA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGACCACCCTCCGGGGCGGTCGAGGATCGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.60,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //