Array 1 8112-7352 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIX01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2012CEB117SAL scaffold_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8111 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 8050 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 7989 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 7928 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 7867 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 7806 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 7745 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 7684 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 7623 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 7562 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 7501 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 7440 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 7379 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9299-11159 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIX01000079.1 Salmonella enterica subsp. enterica serovar Derby strain 2012CEB117SAL scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9299 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 9360 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 9422 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 9483 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 9544 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 9605 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 9666 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 9727 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 9788 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 9849 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 9910 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 9971 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 10032 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 10093 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 10154 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 10215 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 10276 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 10337 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 10398 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 10459 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 10520 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 10581 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 10642 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 10703 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 10764 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 10825 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 10886 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 10947 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 11008 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 11069 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11130 29 93.1 0 A...........T................ | A [11156] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //