Array 1 252-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXZ01000282.1 Salmonella enterica subsp. enterica serovar Kohbu strain BCW_2835 NODE_282_length_282_cov_2.26512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 251 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 190 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 129 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 68 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATGGCGTCATTCGGTACTGATATGCCAAT # Right flank : GAAAACCGTACAACAGACAAAATATAAATATTGGTGTTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21147-21297 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXZ01000075.1 Salmonella enterica subsp. enterica serovar Kohbu strain BCW_2835 NODE_75_length_21350_cov_3.87342, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21147 29 100.0 32 ............................. TCGCCGGGCCAACCTGTAACCCCTCAACATTA 21208 29 100.0 32 ............................. GGGATCGGCAAACTTGTTTTAACGCCGGACAA 21269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : ATTGGCCAGGCCATGTGACCGCTATTGCAGGGGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8-828 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXZ01000069.1 Salmonella enterica subsp. enterica serovar Kohbu strain BCW_2835 NODE_69_length_23059_cov_3.76035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 69 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 130 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 191 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 252 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 313 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 374 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 435 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 496 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 557 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 618 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 679 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 740 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 801 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATATTGG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17498-19967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXZ01000069.1 Salmonella enterica subsp. enterica serovar Kohbu strain BCW_2835 NODE_69_length_23059_cov_3.76035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17498 29 100.0 32 ............................. CTCATCTTTTGTGAGTCGGTTCGCTTTAAGAC 17559 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 17620 29 100.0 32 ............................. CGGTTTCCTGACGAGGCGGAGGCGCTGTTGAC 17681 29 100.0 32 ............................. CAAGAGAAACGTACACAGACCAGCTGCTGGCT 17742 29 100.0 32 ............................. AGGAACAGATCGCGCTCGGCGACGCGGCGGTT 17803 29 100.0 32 ............................. CAATACCCTACCGGAAAGCAGACCGTTACTGA 17864 29 100.0 32 ............................. CCTGTGGTCATTGAAACCCCAGGAGCAGAAAG 17925 29 100.0 32 ............................. CATTGATTTATAATCTTCAGTAATAGCCCGCA 17986 29 100.0 32 ............................. GAATGGAAAGGCTACTTTAAAGTTAAATATAT 18047 29 100.0 32 ............................. CCTCCGGGTCATCCTTTGGTAACGGCTCTGAC 18108 29 100.0 32 ............................. GCCCGCACCCGTATTTTTTCCCTACGCGGCGC 18169 29 100.0 32 ............................. ACTGGCACGCAGAAGACATCAAGGCCGCAGTG 18230 29 100.0 32 ............................. ATGGTGAACATACCGTAAAACTCCACGAAACC 18291 29 100.0 32 ............................. GGTGCCGAAATCTGCACCCGGGTCAGCCGGGT 18352 29 100.0 32 ............................. ACACCGTGCTGAGTCTGAATGATGTGATTGGC 18413 29 100.0 32 ............................. GACAGCATCACCGCGACGGTCGTTTCGAACGC 18474 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 18535 29 100.0 32 ............................. ATGTCCGTAATCATTTTGGTCAGCCAGTATCA 18596 29 100.0 32 ............................. CCTGGTCGCCCGAAGCTGAGGCCGGGTGGCTG 18657 29 100.0 32 ............................. CGATGAGTTACAAAATGATTTTCTTTCGGGTG 18718 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 18779 29 100.0 32 ............................. CGCCCTGCGAACCTCGCCCACGTGCCGCGCAG 18840 29 100.0 32 ............................. CTCTCAGTGTCACTTTTTTAGGACACTCAGAT 18901 29 100.0 32 ............................. AAACGACAGATCCGCGCCAGTAAACAGCACGA 18962 29 100.0 32 ............................. TTCGGTACTGGCAGCATCCCCCGCGAGCACAT 19023 29 100.0 32 ............................. AATACTGGCAACACCTGCCAGAACATCAACAC 19084 29 100.0 32 ............................. TGCTTCGATTAGTGCAGGTGGTACGGACAGCA 19145 29 100.0 32 ............................. CCCCTGGATTCACAGTAAAGCCGCGCCTTATA 19206 29 100.0 32 ............................. CGGATGAAAAATTCGCACGAATGCAGAATGGC 19267 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 19328 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 19389 29 100.0 32 ............................. CATTCGATGCCAGTAAAATTGAAGCACACCAC 19450 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 19511 29 96.6 32 ...................A......... AAAATCGTGAGTGACTATCGTTCTGTTATTGC 19572 29 100.0 32 ............................. GATTTGCAATGGAAATATTTGCATGGATAGTT 19633 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 19694 29 100.0 32 ............................. CGGCCCCGGTGTGGCACCTCCACGAATCGTTA 19755 29 100.0 32 ............................. ATGCCCTCGGTCGCGGGTCCTTCCTGGCCCTC 19816 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 19877 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 19938 29 96.6 0 ............T................ | A [19965] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGCATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //