Array 1 2210302-2210535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOT010000001.1 Bartonella sp. M0191 NODE_1_length_2468635_cov_265.757872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2210302 36 88.9 30 ACA..C.............................. CCGAAGCCCGAACGTTGTTCGAGAGCTTCA 2210368 36 100.0 30 .................................... TGGCTGAAATCGCCTGTGAAATTTCGATCT 2210434 36 100.0 30 .................................... ACGCCACCAAAACACTAAGGGCGGGCGCGT 2210500 36 75.0 0 .A..T.....A...C...........G..G.G.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTCCTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCCTTGAACGAAAAAAGCAAACAGTCCACCGCACAACACTTATGAAACCGAAACATCTTCT # Right flank : CGTCCGGAGACTTCATACATGGCTACCGATCGTTGCTATTTGACCAAATTTTTTGACCTGAAACAACGCTGTTTGCGGCTTCAAGTTTTTCTGGTTTTAGTGCTCTGTTGTCTCGCGATAACGAAGTCGAGTGGAATTACTCTTAACATCTTCAAGTCTTTCAAGGCTCATGACTCGACCTCGTTCTCTACAGATCCCGTCTTCACCAGCACTCTCACCGCAACGCTACCCGATTATCCATTCTCAGTCATAATATTCCCGTTTCACGGGATAGGAGTTATTTTACGATTTTTCCGAAGTTTCAACGCTGATGTTGTGAGTTCTCCGCATATGAGCGCAATAAAAGAGTAAAAGCCCCATCCAATCCAATTTATATTTTATACTAGAGCGGTAATTAATTATGAATACAAAGACTAAGCTTGATGCTTTAACGTCTCTACGATTTTTTGCTTGCTTAATGATTATTTTCCATCATTGTTCGACAACATTTTTCGGAGAGA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2212180-2212744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOT010000001.1 Bartonella sp. M0191 NODE_1_length_2468635_cov_265.757872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2212180 36 94.4 30 .C.T................................ GCACTGGAGTGCCACTGGTTTTTCCCCGAT 2212246 36 97.2 30 ...................................T TCTTTTGCAACTTTGGGAGCAGTGTCAGCC 2212312 36 100.0 31 .................................... CATCGGCAACGAATGGTCCGCGCCCATCGCA 2212379 36 100.0 31 .................................... CGCAGCGATTAGCGAGCTTTCAGTCACAAAT 2212446 36 100.0 29 .................................... CGACCATTCAACGTTTAATGAACAAAGCT 2212511 36 100.0 30 .................................... TGACGGTAAGCTTGCGTTTATTAACGTCTT 2212577 36 100.0 30 .................................... ATTGAACGCTCGGAGTGCAAAAGGTTTCGT 2212643 36 100.0 30 .................................... CACTGGCGTTTGTCTGAACCGTTGGAGGCA 2212709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTCTATTTCTGATACTTTTTATAGAATATATTTTGGACCTGTTGTATATAACTGGTCAACTTTGGTGGGCGGATTTGCCGTAATGGCTGCTGTAATCTATTTTTTTGCACAAGATGGGTTACTCTCTCGTTTAATTTCCAATAAGTTATTTGTTACATTAGGTGAAATAAGTTTTTCTATATATATGTGTCATCAGATAATACTGGTTTTTTTCAGTAGTCACAACGCCGTACTTTTTCGTTTTTCCGGCGGAATAAATTTTATATTATATTTTTTATATGTAATTCTTTTATCTTATGTAATATGGGTTTTTATAGAAACACCTATAAGAAAATTTATTGTAGGCGGGAAGATTGTTCATAGGTCAAATCTTATGAGCGAAACAATGAAAATTAATAGTGTTTTTAGCCTTTATTCTATTATCGCTTTGGTAGCGTTATTATCTATATCCTTCTACATACATTCGTTACTCAGGTAACTTGATGCGCTAATAGTTTCG # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTTGACGTGCCTTTCACGTTTTACTTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGAAGTGATCTTACCAACACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTACAAAGACCTCAAGCAATTTTGCCCCCCACGGTTTTCGATTTTTTAGGAAAGCTTTTGATAATATACCGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCAGACTTTAAGACAGCGTGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGTTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCACCACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 2215600-2216032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOT010000001.1 Bartonella sp. M0191 NODE_1_length_2468635_cov_265.757872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2215600 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATAATGGCTTTCTTGACCATG 2215666 36 75.0 29 C....A..C...T...G....A...G...A....T. TGGCCAAGTTCTGATCTCTGAAGTCGTTT T,G [2215689,2215691] 2215733 36 100.0 30 .................................... GCTTTCGTGCTTTCGCGTTCATAACGGTTC 2215799 36 100.0 29 .................................... TTGATTGTTCTGCAAATGACTCCCGTGTG 2215864 36 100.0 30 .................................... AAAAGATAATAATATCAAAGCATTTTACGT 2215930 36 100.0 31 .................................... AAAGAAAATATCGTGACGAAATTGTTAGATT 2215997 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 94.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTTAAAAAACCGGAAGGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGAAGCTCTCTAAAACAAATAATTTTTTGTCGGGCAAACAGCAATGAACTGGAAAAACTCTGATGCGTTTTTTTAAAATGCGCCTATGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAGCGGAATTTTCCAAAAAATCAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAACAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTGCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGAATGGCCGCGCTTGACCGCTTGTTCCAATCTGATAGACTATTAGCTGTTAGTTTATTGACACTTTTA # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 2216652-2216885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOT010000001.1 Bartonella sp. M0191 NODE_1_length_2468635_cov_265.757872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2216652 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 2216718 36 100.0 30 .................................... ATTTGATTTGGTCGAGCGTTCGCAAGCCTA 2216784 36 100.0 30 .................................... TCTTCCGGAGCGCCCATGAGTGCCGCATTA 2216850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGGGATTGAAAAGTATAATCAACGAACAACCTAATTAAGGAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCCGTTTTTCATTAAAATAACACTGGTAATTTTCGATTTTTTTGACGTGTCTTTCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 2217502-2217934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOT010000001.1 Bartonella sp. M0191 NODE_1_length_2468635_cov_265.757872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2217502 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 2217568 36 100.0 30 .................................... TCAGTTGCAAATAGTGTCTTTGTAAAATTC 2217634 36 100.0 31 .................................... AAACAATACAACAAAATCGCACGGAAACTTA 2217701 36 97.2 30 ..............A..................... CGGCCGCGCCACTCAAATGGCTGTTGTTGC 2217767 36 100.0 30 .................................... AACTACGACGAACATGTCGCAGGTCTTTTT 2217833 36 100.0 30 .................................... TGAGCGAATTTCAATTGCTTGCAAAGCATA 2217899 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 98.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATATAACAGCATAAGAGGAACAAATCGACGAATAACATAATGAGGTAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCATTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //