Array 1 33736-32137 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAQ01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B2995 NODE_6_length_147340_cov_90.464229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 33735 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 33674 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 33613 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 33552 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 33491 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 33429 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 33368 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 33307 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 33246 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 33185 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 33124 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 33063 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 33002 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 32941 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 32880 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 32818 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 32715 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 32654 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 32593 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 32532 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 32471 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 32410 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 32349 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 32288 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 32227 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 32166 29 96.6 0 A............................ | A [32139] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51727-49868 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAQ01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B2995 NODE_6_length_147340_cov_90.464229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51726 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 51665 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 51604 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 51543 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 51482 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 51421 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 51360 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 51299 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 51238 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 51177 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 51116 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 51055 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 50994 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 50933 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 50872 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 50811 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 50750 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 50689 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 50628 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 50567 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 50506 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 50445 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 50384 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 50323 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 50261 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 50200 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 50139 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 50078 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 50017 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 49956 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 49895 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //