Array 1 8982-10403 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGBA01000007.1 Neisseria meningitidis strain NmJPb05x2 NODE_7_length_80842_cov_139.105_ID_17189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8982 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 9048 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 9114 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 9180 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 9246 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 9312 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 9378 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 9444 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 9510 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 9576 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 9642 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 9708 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 9774 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 9840 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 9906 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 9972 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 10038 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 10104 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 10170 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 10236 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 10302 36 100.0 30 .................................... AAACCATGTTGTCAGGACTCCCCATCCCCA 10368 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //