Array 1 2960332-2958838 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF969015.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. 3114 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2960331 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 2960270 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 2960209 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 2960148 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 2960087 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 2960026 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 2959965 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 2959904 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 2959843 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 2959782 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 2959721 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 2959660 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 2959599 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 2959538 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 2959477 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 2959416 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2959355 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2959294 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 2959233 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 2959172 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 2959111 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 2959050 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 2958989 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 2958928 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 2958867 29 100.0 0 ............................. | A [2958839] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2977840-2976896 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF969015.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. 3114 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2977839 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 2977778 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 2977717 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 2977656 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 2977595 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 2977534 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 2977473 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 2977412 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 2977350 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 2977289 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 2977228 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 2977167 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 2977106 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2977045 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2976984 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2976923 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //