Array 1 72491-72786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000037.1 Paenibacillus polymyxa strain HK4 HK4_mira_c37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 72491 32 100.0 34 ................................ AAGCCAAGCGATACAGCAAAAACATAGGTATAGA 72557 32 100.0 34 ................................ TATTTTGTTTGCGGCAATCATGACCCTATTTTTG 72623 32 100.0 34 ................................ AATCTCCCTCATAAGGTTATTAGGTGGAGTCCAA 72689 32 100.0 34 ................................ TGACCAAGCTGTTTAGCCAGCCAATCATATCGAA 72755 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TAATATCTGATTACTATATTTATTGTTGTGCGCTACAATAGAGAAAAGGAAGCACTTGGATACATAGTAAAGGATTTCACAAGACAATAGATGATATGAGGAAAATCGTATTGAAGGTGGTACAATCAAATAGGACAGAATTTTTATTCCTATATTATAGTATTTCGGATTTGACCATAAAGTATAAACTCAATGATTTGATAGACCAGAAAGAAGACAAATTGCACTTTTACTAATTAGGAGAGATAACTACAAAAAGAAAGTAGAGAGTATAGGGAATAAGGAAACTTACGATTGGAAAAGTGCACTGAGTTTATATGGTGCGAATATGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCAAAAGTCATTCGAATCAGTTACCTTCAGTAAAAGTCAAGGTTCTATCCAAGCCTCTTTGGCATTAGTTTTTGCGACAATATGAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TTCCTGCAAATCGTCTTAGCCGGGTGCATCAAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30-533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000038.1 Paenibacillus polymyxa strain HK4 HK4_mira_c38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 30 32 100.0 36 ................................ TCCAGCAGCGTGAAGCCGCAGGGCAGGACACCTCAG 98 32 100.0 35 ................................ GAATCCTAAAAACGTGACTGCGCCAGCACCAAATC 165 32 100.0 35 ................................ CTTTCCCCATCTTAGCTGCTCCAATTACTGTATAA 232 32 100.0 34 ................................ TTTTTCGAAAATTTATTCTAAAGAGGACTATATA 298 32 100.0 37 ................................ TCTTAAATTTTTGGAGGTATAAAAGCGTCGTATGAAG 367 32 100.0 35 ................................ AATGCCGTAGCTAAATCTGTGATATTAGCCATGAC 434 32 100.0 36 ................................ TTGTCCGTAGTGAAAGTCTGAAAAAAGGACGTTTGC 502 32 96.9 0 .........................G...... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TAAGGTACTTGGATACGTAGTTTTTCGCTG # Right flank : TACGCAGTCTTTTTTTAGCTACCAAAACATCCTATATGTCACACTCGCTCCCTGAGAATCTCTTTTTGGGAAATCTACATAGGGCTGTTTTTATAACAAGACTTATGAAAAAACCTAATTTGCTTGGTAGCCAGTTTATGAACATATAGGTATTTTTACTTAGTTGGACTATAAGAGTTAATTAAAGTCTATAAAACACTTCTCCCCTGATAGGAATGTATTGATAATGCATTGATATTTTTCGAGAAATTCACGCAAGCTAATGATGTATATCAATAAGAAATGCAAAAATAAAGCTAATCCAAGAACGGATCAGCTTTATTTTTCGTTCAATTTCACAGTCCTAGAAGCCGTCTGCAGGGAAACGAGTAGGGTTCTTATGGTTTTAACGTTCGGCCTTTGAAGAGAACGTAGGACAGCTCATTTTTGATAATTTTCTTATTTTCTATTGTTTTTACATAATCTATGTCATATTCGCGAGTTACAAGTTCATCCTTATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5801-5970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000038.1 Paenibacillus polymyxa strain HK4 HK4_mira_c38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 5801 32 100.0 39 ................................ TTAGCCAACTTATATCGAGCATTGAGCCAGTGGAATAAA 5872 32 100.0 34 ................................ ATCCTTACCGTTAGCAAATGCTAAGTTCTTTTGA C [5879] 5939 32 93.8 0 .........................G....C. | ========== ====== ====== ====== ================================ ======================================= ================== 3 32 97.9 37 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TCTTAGTCTACATCGCATCTATGGTGTAGCTTACTTACCAGGAACAGCCTTGAAGCGCACAGGAAGCGACTACAACATCTTATTTGTCTCACAAACATGTGCTGGATTTATTCTGTTTCACGATATGCTCTTCCCACTTCAGCAACGCTTTGCAAGGCGCTCAAACAGGATGTACTTACAGCGCATCATCAGGATTAGCTATGAAGTGGATAAGTTTGGCAAAAATAATCCTGCTCGTAGCGCTAAGAGGGAAAGGTATTGACGGGAAGACCAACGCAGGATATGGAAGGTTCTTAGGGGCTGAACGATAGAATCGTGAAGGTGCGAATGTGAAGCTCACATGAAAACCCCGGGCCCTTCGCACCTCGGAATTTGTCGAAAATCATTTGAATCAATTACCTTCAGGGAAAGTCAATGGTTGATCCAAGCACTTTTGCATCGTTTTCTGTGATAATGTGTAAAATTGATATCATCAGAGTATGAATTACTCCATTTTCGCA # Right flank : TACGCAGTCTCTTCATAGCTACCAAAACATCCTCTATGTCGCATTAGCCCCCTGAGAATCTCTTTTTTTGAGATCTACAGGGGGCTGTTTTTATAACAGGACTTATGAAAAATATCGTTATAGCTTGGTATTTAGTTACGATTATAAATATAATTTTTTTACTTAATTGGGATATAAAAATTAATTAAAGTTTATAAAACATTATTAAGAAAATTTATCCTTGTAAAATACATACAATCATAATTATAATTAACATGATCCTTAATGCCTATGTTAATCAGGTTCTTTTTTCCTATTCCATAACATGAATTAGATTATTTTAGGGCTAATTAAGAAGAAATAGTACAGATATAAGATTGATAGAAAGGGCCTGAGAACATGGGAGAAATTAAAGCCAGCAAAGATAATAAGGTTGAGAATGTATTTGAACGTATTCATCAGAATTACCGTTACCTGAATCAAATGATGGTAGAAGAGATCGATATTGCTTCTGAGCATGG # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 212102-211593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000003.1 Paenibacillus polymyxa strain HK4 HK4_mira_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 212101 32 100.0 36 ................................ CTACAGGACATGACAGGGAATCGACGTTTCTGGCCG 212033 32 100.0 37 ................................ TTAGAACCCCGGCCGCCCTTGACTACACGGTAACGTC 211964 32 100.0 38 ................................ AGCTAAATAACCTTTTGGTTCTTTGAAATGCGCAAGCA 211894 32 100.0 38 ................................ AGTTAGGAGGGAAGTAACATGAGTAAATTGACGCCAAA 211824 32 100.0 34 ................................ CGTTACAAAATCCTCGGTCCTGCTGAACGTGTGG 211758 32 100.0 35 ................................ TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGC 211691 32 100.0 34 ................................ TACATCCCCAGCGGCCTGAGCGTCCTTGAGCAGC 211625 32 81.2 0 ..........A.A........AC....A...T | C [211600] ========== ====== ====== ====== ================================ ====================================== ================== 8 32 97.7 36 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Left flank : CGCTGAAAACAAACAGAGATAAAACATATCTACGCATGAAAAGAGAAGTTATGTCGCTGAACGAACTGGAACATGCGTACATAGCCAACAAACAAGACTATCAAGCCCGCAAAGCGTTTTTCAAGAAAAACAATCTATTTCCCTTTTCTGTGCATGTTTATGGGTAATTCGAGGTGCTTTATAGTCAAAAAAGAACAATATATAAATCTATTATATCGTATAAATAAGAGAGTTGTAGTTTTTTTGTGGTAAAATAGTATCTAAATTAAGTTGATTGACCTGCTCTTCAAAAATGGAGTGACCATAGGAAAGATGATTCGGTGCGAACCCCAAGCGCACATAAAAATCCCGGGTCCTTCGCACCTCGAAAATTGTCGGAAAGTATCGAATCGGCTATCTATCCGCAAAAGTCAATAGTTGATTCAAGCTTATTGGGCATCATTTTTTGCGACAATGCGTGGAAATGATATCCTATGGATATGAATTACTGCATTTTCGCT # Right flank : CGCGAGCAATTGCAGATTTTATGACTACTTTACGTAGTTACTCTTTTTAAGGGAGTATGACGTATTCTCGCAAAGTATCGATACAAATCTTATTTAACCTGGCTCCCTTTTAAATCAGGAGAGCCTTTTTTGTCGTGATTTTTATAGTCAGAAAAACGAGTTTGATATGGCGACAGGTGATATTAATTCCAATCCAATAGATGTTTCCAACTACGGGATTTATGTTAACAATTATGAGCAAGGAACTACTTCTCTTCCAGAAAACATAGGAGCTCGCAACTCGACCAGAGCTGAAAAGGCATAGGCGCTTGTAGTTCATGCCAAGAAGGGGCCTGATATCAAGTTAAAGTACCGGCCAGACGTAATAAAGATACATTAAATATGAAGCTAGGAAAGCACAAGTTAGTATTCAGCCGTGTTTATTCACCAAGGATAAGAAAATGGTCTTATTTTCACAGATTACAAATAGAAAATCTTTTGCATAATATATTCCAATAGAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 214800-214434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000003.1 Paenibacillus polymyxa strain HK4 HK4_mira_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 214799 32 100.0 35 ................................ AAATCACTGTAAGTCACAGACATATCCGAAAGCAG 214732 32 100.0 34 ................................ AGGTCCATCGACTGGTTCCTCTTTGATTTCCTCA 214666 32 100.0 35 ................................ TATGAGTTAGGGGAGGCCATCGTCCCGGACGCAGA 214599 32 100.0 34 ................................ AGTCACAATGATACAACCAGCAGTAACATTCATC 214533 32 96.9 36 ...................T............ TTTTGTCATGGGTTGATCATCCTCACTAATAATATT 214465 32 90.6 0 ........T..............A.......G | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.9 35 GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Left flank : GGATAAGGCTTTGTAACGCGTGCTGTCGCTCCTTATGTAGGAGCGTGGATTGAAAGGTATATAGGGGTATAGGGTAAGAGGCTGTAGCTCCCTTTATGGGAGCGTGGATTGAAACGGCTTGAGCTTCCACGCCTTCATTTCCTCTTTCTGGGTCGCTCCCTATATGAGAGTGTGGATTGAAACAGACGCATGGTGTAATAACCCCAAGTAGGCTGAAGAAGTCGCTCCCAGTATTGAAGTGTGAAATTTAAACTCAGCTCGCTATACTCACATCCGTAAGTTCGTTGCTTCTCACAGGGTGATGTACAATAAACAATTTAACCTTTAATTTGGTGCGAACCCTAAGCGCACATGAAATCCCCAGAACATTCGCACCTCGCGCCAGACAAGGAATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGATGAGTTGAAAAGAGATTCGTGAAAAAGCGTTTACAAATCCTTGCTGGATAAGGCTTTGTAACGTGTGCT # Right flank : TATGTATTTCTCATACCGCACATATAGCACAGCTATGACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCCTAGTACTAGGCAAGCCTTCTTGTGTGCTGGTTGTAATATGGAAATAGGTTCAAAATGAACTAACATTTTTATAGACGTGGAACTGTTCGGAACACCACTCTAAAAAGTGAAACATAAAAAAGAAGCCCGTTTTGAAAACAGACTCCTTAATGTACTCCCACGTTAATATGCACAAACCACACTATTCTGTTTCTTCAAACTGCATTAACACGGAAATGTCTTTGATCTCCAGAGCATGAGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTCCCATTTTTACAAAGCTGTGAGATTCTTGCTTGATTAACACCTGATTTTTCCGAAAGTTGCATTTGCGTCATATTGCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 223833-223599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000003.1 Paenibacillus polymyxa strain HK4 HK4_mira_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 223832 32 96.9 36 .......T........................ AGAAGCCAATAACCATTGGGCGCTTGGAATTTTGTA 223764 32 100.0 36 ................................ GGGCCTCTGTCTGGCTCAGTGGTGACTGATATTATC 223696 32 96.9 34 .............................G.. ATCCTATCTTCTTCCCTTCTTATTGGAGTCTATG 223630 32 81.2 0 ........C...A.G.....A.AC........ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.8 36 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Left flank : TGAGTATATTGAGAATTATAATGACTTAAAAAAGAGCCTAACGGAGAAATACGGCAAGCCTAGCAGTGATGATACCCTTTGGAAGGGAGATTTATACAAAGGCACGCCAAGCCAATGGGGAATGGCTGTAGCGACAGGCGAATTGCATTATCAGACAACTTGGGAGACAGAAGATACAGAAATTTTGCTTGATTTACAAGGTGATAATTTCGAGCCCCGCCTGAGTCTAGTGTATGGTAGCAAGGAACTACAGCATTTGAGTGAGCAGCAAAAGGATCAGGAATTGAAAAAGAATTTATAACAGTATAAGGCATGGATTTCATAGGCTTTAAGTGCGAACCCCAAGTGCACATGAAATCCCCGGAACATTCGCACCCCGCGCCAGACAAGGGATTCAGCGATTTTGGGTTGTGTCTTTTTACATTTATTGGTGAGTTGAAAGGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTAGATAAGGTTTTGTAACGCGTGTT # Right flank : CAGCCAGAACTGGCGACTCGTCACTCTCTGGACGTGAGAGGTACAACAACCAATAATTGTCCTTTGATCTTGTGAAAAAATAAAATAACCCAAAAGCACCGAAGGTTCTCCTGAAACGGGAACTTGGGTGCTTTTTGGCTTTTTGTATTTTAGGTTAGCGAAATTCTCCAAGTGATAGAGAACGTATGCGAGAATAATGTAGAATCATGGAAAATAATCCTGTAAAATTTTCCATCATAGAGTATAATGTTCTATAAAAGAGATACTTTAGCCTATTTACAGTTGTTTTTTCTCGGGAAATAGTTCATTAAAACTATATAATTAGTCATGATGAGAGGTGAGTTTATGAACTACAAAAATCGCATTTTACCGCCTGAACTGAAGGATGTAAAAGAAAATTTAATAAGTGGCAGAAAGCAATCAAAAGAAAAGAAGCCCTACGAGATCAAGATTGTCACCCCCATGTTCGGAGGCGGCAACGAACCGGGGGAATTGGATGA # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 71010-70514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000040.1 Paenibacillus polymyxa strain HK4 HK4_mira_c40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 71009 32 84.4 33 ....TG...T..A......T............ GACCTCTATAGGTACTCTGGATCTCTTTAGTAA 70944 32 96.9 34 ........A....................... GGCAATCCTTTTACCGTCCTATTATGTTGTTAAT 70878 32 100.0 35 ................................ CAACGTCTGAAATGCTCATACCGGGTATACGCGGC 70811 32 100.0 37 ................................ TTCCCACATGTTGCAAGCAGGATGGTTAAGCTCCCCA 70742 32 100.0 34 ................................ GATATCGGACACATATAATCCGTATCTTTAAACC 70676 32 84.4 34 .........T..A.........TT...A.... TTTGTCAAAATTCGGATCGTCAACGTTCCGCTTC 70610 32 100.0 33 ................................ AGCCATACATCGTTTACATACGCAATTACTGTC 70545 32 90.6 0 ............T...........T.A..... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 94.5 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTTTTGAAATCATTGCAATAGTTTTAACCCTTATTTTATATTGTAGCTCCAAAAAAATAAAAATATTATATTGCGTTACGTAGAGAGGCGATATCCTAATGCTGCTTGTATCTATTAAAAAATATATCCCATTCTAACCATTAAACGTTAAGATGTTCGCTTGCTTCACTTAGGTTAACCTATCAATAGGATACTAACTTTTTTTGCGTTGGATGGATAACTGGATATTATAGACTTATACTTATCATGCATTAAATCTTATTGCCCCTTCTGCATCCACTCGGTTAGCTATTTTTTTCTTGATTATAGCAGTTATACCTGGTGCGAATGCCAAGCTCACATGATTTCCCCGAGTTATTCGCACCTCAGATTTTGTCAAAATCGCATTGAATGTGAACAACACCTGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATTACTGTTGTACGCTACAATAGAGATAAAGGCTCTTGGATACGTAGTTTTTTGCT # Right flank : TAGATGCTGTAACCTACAAACTCCTGTCCAACGATATGGAATCAGCACTGGAAGAACTTCGAGGAGTATATGTCGACCATTTTGTCCTTACATTGATTAATAAAAAAATTGAATCATAGTAAAGGATTTTACAAAAAAGAAAATGAGGCTGCCATGAATGATGATGACACGAGGAAAATCGTATTGAAGGTATGACTCAATGAAAACAGGATAGGATTAATTATCCCTATAATAGAAAAGTAACTGAATAAGTTACCCTCAGTTAAAGTCAATGGCTGATCCAAGTCTTTTTGGCATCAGTTTTTGCGACCATGTGAGGAATTGATATCATTAGGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTTCTGGATTGAAATGCCCGGTCCAGTGCTGGTATCTATACTTCTTCGTTTCTCCAGTGTCAGGATCAAATGCGGGGTCTTCCTCTAAGCCAAGAACATCCTCTTCCTTTTGACCGAATTCTATG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6531-6099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000045.1 Paenibacillus polymyxa strain HK4 HK4_mira_c45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6530 32 96.9 34 ...............G................ GTTATGGAGTATGTACGCCAAGATGTAAGTTCCA 6464 32 96.9 35 .........................C...... TCCTACGTTTCCCTCACGCTTAACCTCACGATAAT 6397 32 100.0 37 ................................ CCATCTTGTGCCGTAATCCACTGTATAGTTCAGTGTT 6328 32 100.0 36 ................................ CTTTATGCTGTTTCAGCAGCTTTGTCAGTCCCGATG 6260 32 100.0 34 ................................ TAATCTGAACAGATCATGGCCATCCAGGTATTTG 6194 32 93.8 33 ...........C.............C...... TTTGGCTTGTGCTGGTTGCTGGGCGATAGACTG 6129 31 93.8 0 ...............G....-........... | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 97.3 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATGTGAGGTCGCACTCCATGTGAGTGCGTGGATTGAAATAGGATTATCGGAAAGCCTTGTATAACCAGGTACAGTCGCACTCTATATGAGTGCGTGGACCATGATGGAGCAGCCGTCACCTGGTCGTACGATTTGGAGAGCGCCGCTTTATCCGAAATAAAAAGGTCCGGTAAGTGGAAGAACGGATATTTTATGCGATTTGAATGGTGGGCTTCGGTTTAGTATACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATAATTTTCACTTCCATGGATGCCATAAACATCCGCCGTTATATAATGTGAATGGTGCGAATGTGAAGCTCACATAAAAACCCAGAGTCCTTCGCACCTCGAATTTTGTCGAAAAATAACTGAATCAGTTACCTTCGGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTACGATAAAGTAAGAAATTGATATCATTAGGGGTATGAATTACTACATTTTCGCTGTC # Right flank : GCCCGGTCCAGTGCTGGTATCTATACTTCTTCGTTTCTCCAGTGTCAGGATCAATTGCGGGGTCTCCTTCTAAGCCAAGAACATCCTCTTCCTTTTGACCTAATTCTACGTAGTCCGTTATGTCTGCAAAAAGCAATTTTCATGTACTCCATCAGTACGCGCTGAGCATGGAAACCTACCCCATCCAATTGAATATGCTGTTTTCTAACTATATTCAGCAGCTATTGCAGCCATTGCCGCCCTTGTCGCGTTGAAATCTCTGAGGTATTCCATTACGAAAATCGGCTGTTTCGGCGTTACCCCCTCTTCGTCCGGAATTTCCGGCTCTGGCTTCTCCTCGATTACTGGAACGCTCTTCTTTGATTTGGTACGCTCCATATTACTAGAACATTCTGGACTTTTTTGGAACGTTCCGTATTTCTGGAGCAGCAACTTTTAGCTCTTTAGAGAGCGCATCAACTGTAAGTGGGATAGATATACCTCTCTCGGCTTATCATCTC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 41352-41121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000045.1 Paenibacillus polymyxa strain HK4 HK4_mira_c45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 41351 32 100.0 35 ................................ ATCGAAAAGCCTATCAACCACCCTATTAATTCCTG 41284 32 100.0 34 ................................ CTCGGCTTTGGGATAACCCTGTAACGGCGGTACG 41218 32 93.8 34 .........T.C.................... AAAACTGCTAACTTAGTTTGACTTATTGTGTTTT 41152 32 75.0 0 T........T..A........AAT.....T.C | ========== ====== ====== ====== ================================ =================================== ================== 4 32 92.2 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AAGAAGGTGACTGCTTCTTTAACCGAAATCATGAAGCAAGTCCGCGAAGTGGAGGAATTGGACATTTTACGCGGTTTGGAAGGAACGGCGGCGGTASTAGTACACTTCCGTGTGAGATGAGGTGATCTTGTAGCAAAAAGATGATTTTCACTTCCATGGATGCCATAAATACCCGCAGTTAAACCTATTGTGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGAAGCTGAATCAGTTACCTTCATTTAAAATCAAGCGTTGATCCAAGCCTTTTTGGCATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTATTACATTTTCGC # Right flank : GATAGCTTAGAAATCCCTTATCCAATGAGGATGAATTCCTGAAAACGATACTGAAAAGCATCCCAAAATTTCAAGAAGCCTTACGTGACTTATGAAGTTAAGTCTCAGTAAAAAAGTCCTGCTAACTTTAGCAGGGCTTAAGATATATTGGAGTTATCACTTTTGTTGTTACCAATCTAGTCAATAAACCTTAAAATATTGTCAATGCTATTCCACTTGTGCCCTACCATCAATCAGATGAAACCTATCGGTGCTTATTAGAAATTGTTAGTTAGCAATTGGTAGTCATCTATAATTTTAATAAGTTCTATAATGCTATATATAATTGCATTAATGCTTATCCAGTCCCCTTTACTCTTGCAGACAACGAAAAAGCCCGCTGCCAGAAACGTTTGGTTACGCTCCGCGCGGACTCTACATTTTTGATATATATTTGGGTATCAATCGAACTGTATGTTTCAGTTGACCCTTGATGCCTAGAAAGGATGGTGAGCGGCCTC # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 66-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000049.1 Paenibacillus polymyxa strain HK4 HK4_mira_c49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 66 32 100.0 34 ................................ AAGCCAAGCGATACAGCAAAAACATAGGTATAGA 132 32 100.0 34 ................................ TATTTTGTTTGCGGCAATCATGACCCTATTTTTG 198 32 100.0 34 ................................ AATCTCCCTCATAAGGTTATTAGGTGGAGTCCAA 264 32 100.0 34 ................................ TGACCAAGCTGTTTAGCCAGCCAATCATATCGAA 330 32 100.0 35 ................................ TTCCTGCAAATCGTCTTAGCCGGGTGCATCAATTT 397 31 75.0 0 .........T..A....-...ACT..C..C.. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.8 34 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GCATTAGTTTTTGCGACAATATGAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTG # Right flank : TGACAGTCCGCAGAAAGGAACATGGAAATCCCTTACCCAATGAGGGTGAAATTCCTGAAAACGATACTGAAAAGCATCACAAAATTTTAAGAAGCCTTACTCGTGACTTATGAAGTTAAGGCCTAGTAAAAAAAAGACCTACTAAATTTAAACTGTACCCTCTGTAAAGGACATTTTAAAAAGGGCTAGGCTGCTTGAAAAAGATGATCTCTGTATTGAACAGGGGTCATCTTTTTTAAATTCCATTGGTATCTGTAATGGTTGTAATAAGTCATATAGTCATCAATTTCACGTCTTAGCTCTTCCATAGTCGCACAGGGTTTGATGGAGGCCTCATCCTTAAAATGACCAAAGAAGGATTCTTGGGGGGCGTTATCCCAACAGTTTCCTCGTCTAGACATCGACTGGTTTAACCCCATTTTCTTAACCATCTTTTGAAAATCAGGATGTGTGTAATGTGTTCCCTGATCCGAATGAATAAAGGCACCCTTTGCTTTTTT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 342-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000046.1 Paenibacillus polymyxa strain HK4 HK4_mira_c46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 341 32 100.0 36 ................................ TCCAGCAGCGTGAAGCCGCAGGGCAGGACACCTCAG 273 32 100.0 35 ................................ GAATCCTAAAAACGTGACTGCGCCAGCACCAAATC 206 32 100.0 35 ................................ CTTTCCCCATCTTAGCTGCTCCAATTACTGTATAA 139 32 100.0 34 ................................ TTTTTCGAAAATTTATTCTAAAGAGGACTATATA 73 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTATTGCAAACCTAATAACAGAGATGGGACATGGGTAGAGTTAAAGGAAGGGACTAAGGTGGTCGCGGATTCCGTTGAAACGGTGGGGAGCCATGAAGGGAAAATAAAAGCTTATGTATATAAAGAATGGGAACTAGGATATGGTGGTGTTGATGTTTATTTTGATACAGACTCACTGAGCATTGTTTATTGAACAGTTGGAATAAATTTATATTTATAATCTGAATACCACCGGGGTCAATTATATCCTTAAAACAAAAATCTCCATTTAACGAATCATAAGAGAACTCTAGAGACAGTGTATTAAGTAGATATTTCTAGTGCGAATGCCAAGCTCACATGATTTTTCCAGATCATTCGCACCTCAGATTTTGTCGAAATCACACATAATGTGAACAAAACCTGAACTCAATTGGAGAATTAGTATATTCCGGTTACCATTTTTACTGTTGTGCGCTACAATGGAGATAATAAGGTACTTGGATACGTAGTTTTTCGCT # Right flank : TTCTTAAATTTTTGGAGGTATAAAAGCGTCGTATGAAGGTCG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 70462-70696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000046.1 Paenibacillus polymyxa strain HK4 HK4_mira_c46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 70462 32 100.0 35 ................................ ACGCATAAGAATTTGAGCCAGGAGAATACTAGCTA 70529 32 100.0 35 ................................ ATCGTTATACATATGCATCCCCGCAAACACCAAAT 70596 32 96.9 35 ...................C............ ACCAAGTTTCCCGAGTCCAAGCTAATAAAATCGGG 70663 32 78.1 0 ..........G.....A..C.....A...TGG | CC [70688] ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 35 GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Left flank : AGCTAATCCCTCCGACCTTGTCTACATAGACGTTTCTTGAAATCACGTTGTAGCCCCAAAAAAATTATATTACGTTACGTAGAGAGACGATATCTTAATGCTAGAATGCATTAGAAAATATCGCCCCCCTCCTTGTATCTATTAATTAATATGTCCCATTCTCACCATTAAACATCACTACCTTCGCTTGCTTCACTTAGGATAACTTATAATAGGATACCAACTTATTACTGGTTTTTATAAACTTATACTTATCATGCATTAAAACTTATCGCCCCTTCTGCATCCACTCGGTAAGCGTAGATTAGCAGCTATACCTGGTGCGAATGCCAAGCTCACATGATTTCCCCGAGTTATTCACAACTCAGATTTTGTCGAAATCGCATTGAATGTGAACAACACCTGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATTTACTGTTGTACGCTACAATAGAGATAAAGGCTCTTAGATACGTAGTTTTTTGCT # Right flank : AGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGTTTTATCCGAAATAAAAGATCCGATAAGTGGAAGAACGGATATTTTATGCGATTTGGAGGGTGGCCTACGGTTTAGTAGTACACTTCCGTGTGAGATGAGGTGATCTTGTAGCAAAAAGATGATTTTCACTTCCATGGATGCCATAAATACCCGCAGTTAAACCTATTGTGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGAAGCTGAATCAGTTACCTTCATTTAAAATCAAGCGTTGATCCAAGCCTTTTTGGCATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTATTACATTTTCGCTGTCGCACTCCATGTGAGTGCGTGGATTGAAATATCGAAAAGCCTATCAAC # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 151242-150592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000007.1 Paenibacillus polymyxa strain HK4 HK4_mira_c7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 151241 33 100.0 37 ................................. ACCAGCTGCAGCCGGAGCTACAAACTGGTTAAGGTAA 151171 33 100.0 35 ................................. TACCATGGAAGGGAGGTGAGCAACAATGAAAAAGA 151103 33 100.0 37 ................................. AATCGCGACGTTGACCTCGGACAGATATTGTGTGATT 151033 33 100.0 37 ................................. ATCTAAGGCGTATATCTTCCGCCGTGTTTTATCATAA 150963 33 100.0 33 ................................. ATCTATAATTGCTTCATGTGTTCCTTGAACTAG 150897 33 100.0 35 ................................. AACATCGTGCGGTACATCCAGAATCACAAGGTTTC 150829 33 100.0 36 ................................. AATAAAGATCCAGACTTAAATAAAAAAACAGGTGTA 150760 33 100.0 37 ................................. TCGAAGGCGATACCGCCGAGCAACTACAGTTATACGG 150690 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 150623 32 87.9 0 ..........A....-........A...A.... | ========== ====== ====== ====== ================================= ===================================== ================== 10 33 98.8 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGACAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTTGCT # Right flank : ATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTCCATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCTAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 161321-160352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZY010000007.1 Paenibacillus polymyxa strain HK4 HK4_mira_c7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 161320 32 100.0 37 ................................ ATGCAGCTCCGCGATATACCCATCCCAAGGAACCCGA 161251 32 100.0 34 ................................ ACCTGCATTCGTGTAGGTGCGTATAAGGTATTCA 161185 32 100.0 34 ................................ GACTGCTTCGGCCGGTGTTTCCTCTGCGGCTTTC 161119 32 100.0 36 ................................ CTTCAGATCAGCTTCGTAAATGGTCACCATAACCGT 161051 32 100.0 36 ................................ CTATACGCAGGAACTCGTCATAATCCTTATCTATGA 160983 32 100.0 35 ................................ CAACTCACAGGGCGGCATTCTCTATTTGGAGGCAA 160916 32 100.0 35 ................................ TTGTTCATGTATCAGCCTCTCCCCCACTGTTTCGC 160849 32 100.0 37 ................................ TGCTGTACTTGTAGCAACTTGAGATTGTCTAATAATC 160780 32 100.0 34 ................................ CCGAAACAAAGGAAAAATACTCAAAATTCATTGA 160714 32 100.0 34 ................................ TTCCTGGATGTGAATGTACATTTGATGCGTCCAA 160648 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 160580 32 96.9 34 ....................A........... AACTAAATAAACAACAAAGGACTCCATACTGGTT 160514 32 100.0 34 ................................ TAAAATTTTTGGAAAAGGGTAGGGGGCTCAAATT 160448 32 100.0 33 ................................ CCCTAGTTCCACCTGAAGAGCTAGAATTTTTTC 160383 32 93.8 0 .......................A...A.... | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTGGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAGATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCT # Right flank : TATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATGAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATCTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //